Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05846 ATGGCTCGTACCAAGCAAACAGCACGCAAATCCACCGGAGGCAAAGCGCCAAGGAAACAGCTAGCCACCAAAGCTGCTCGCAAATCAGCTCCGGCAACCGGAGGAGTCAAGAAGCCACACAGATTCAGGCCAGGAACCGTTGCTCTGAGAGAAATCAGGAAGTACCAGAAGAGCACTGAGCTTCTGATAAGGAAGCTTCCGTTCCAGAGGCTTGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTCCGATTCCAAAGCAGTGCTGTTTCTGCTCTCCAAGAAGCGGCTGAAGCTTACCTTGTTGGTTTGTTTGAAGACACTAACCTCTGCGCTATTCATGCTAAGAGAGTTACCATTATGCCCAAGGATATTCAACTTGCTCGCAGAATCAGAGGCGAGAGGGCTTAG 411 0.5012 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05846 136 SUPERFAMILY Histone-fold 2 133 IPR009072 GO:0046982
Vifa1g05846 136 Pfam Core histone H2A/H2B/H3/H4 1 132 IPR007125 GO:0003677
Vifa1g05846 136 PRINTS Histone H3 signature 80 98 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vifa1g05846 136 PRINTS Histone H3 signature 114 135 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vifa1g05846 136 PRINTS Histone H3 signature 98 114 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vifa1g05846 136 PRINTS Histone H3 signature 34 55 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vifa1g05846 136 PRINTS Histone H3 signature 3 17 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vifa1g05846 136 PRINTS Histone H3 signature 17 31 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vifa1g05846 136 PRINTS Histone H3 signature 58 75 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vifa1g05846 136 MobiDBLite consensus disorder prediction 1 43 - -
Vifa1g05846 136 Gene3D Histone, subunit A 2 136 IPR009072 GO:0046982
Vifa1g05846 136 FunFam Histone H3.3 53 136 - -
Vifa1g05846 136 ProSitePatterns Histone H3 signature 1. 15 21 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vifa1g05846 136 ProSitePatterns Histone H3 signature 2. 67 75 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vifa1g05846 136 PANTHER HISTONE H3 1 134 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vifa1g05846 136 SMART h35 34 136 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vifa1g05846 136 FunFam Histone H3 2 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05846 Vifa-Chr1 915498636 915499046 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05846 1 915498636 915499046 Vifa1g05846 1 915498636 915499046 ECH