Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05833 ATGTGGCCCGACCTTATTCAAAAGGCTAAAGATGGTGGCCTGGATGCAATTGAAACTTATATATTTTGGAATCGCCACGAACCTGTTAGAGGTGAATATAATTTCTCTGAAAATTTGGATTTCATCAAGTTTTTTAAGCTTATCCAAGAAGCTGGACTATATGTCATCATGAGGATTGGCCCTTATGTATGTGCGGAATGGAACTATGGAGGGTTCCCGTTGTGGCTTCACAATATTCCAGGGATCGAGTTAAGAACCGATAATCCAATTTACAAGAACGAAATGCAAATTTTTACCACAAAAATTGTGAACATGACAAAAGAAGCAAACTTGTTTGCATCACAAGGTGGACCCATTATTCTAGCTCAAATTGAGAATGAATATGGAGATATCATGTGGAATTACAAAGATGCTGGAAAGGCATATGTAAAATGGTGTGCTCAAATGGCTCTATCACAAAATATCGGTGTTCCATGGATCATGTGTCAACAACCTGATGCTCCTCAACCTATCATAAATACTTGCAATGGATATTATTGTCGTAATTTTAAACCCAATAACCCAAAAAGTCCTAAAATGTTCACTGAAAATTGGATTGGTTGGTTTCAAAAATGGGGGGAAAGGGTTCCCCATAGAAGTGCTGAAGATTCAGCTTACTCTGTTGCACGCTTTTTTCAAGATGGTGGTGTATTAAACAATTACTACATGTACCATGGAGGAACCAACTTTGGACGCACATCAGGTGGACCGTATATAACCACGTCGTATGACTATGATGCCCCAATTGACGAGTATGGGAATTTGAACCAGCCAAAATGGGGACATCTTAAGCATCTTCATTCAGCAATAAAATTAGGTGAAAATGTTCTTACAAGTTATAGTGCAAGGAACGACACGGATCTTGGTAATGGAATCACACTAACAACATACACTAATTCCACTGGAGCTAGATTTTGTTTCTTGAGTAATAATGACGCTAATAAAGATGCAAATATTGACTTACACAGTGATGGTAAATACTTTGTTCCTGCTTGGTCTGTCAGTGTTCTTAATGGTTGCAATAAAGAAATTTTCAATACTGCAAAGGTTAATAGTCAAACCTCAATAATGGTGAAAAAGAGCGATGATAAAAGTTCTACTAAGCTCACTTGGGAATGGAAAATGGAGCCAAAGAAAGACACCATGCATGGAAAGGGAAATATTAAAGCACACCAGCTTTTGGAGCAGAAAGAACTAACATTGGATGCTAGTGACTATTTATGGTACATGACTAGTGTTGATATCAACGACACTTCTATTTGGAGCAATGCAACTCTTCGTGTGTACACTATGGGTCATACACTTCATGGTTATGTTAATAGGAGGTATATAGGATACCAATTTAGCCAATGGGGAAACAAATTCACTTATGAAAAAAAAATTTCTTTGAAGAATGGAACAAACATTATAACTTTGTTGAGTGCCACCGTTGGGCTTGCAAATTATGGTGCTTGGTTTGATGAGATAAAAACTGGCATACCAGGTGGTCCTGTTCAATTGATTGGAAATAATAATGTGACTATGGATTTGTCAACCAACCCTTGGTCTTATAAGGTTGGTTTAAATGGTGAGAGAAAACATCTATATGATTTGCAACCACACGTAAGTGTGTCATGGAACAATAATTCATCTTATATTCCTATCGGAAAGCCCATGACTTGGTATAAGTCTGAGTTTAAATCTCCTTTGGGAACAAACCCTGTTGTGGTTGACCTACAAGGATTAGGTAAAGGCCATGCCTGGGTGAATGGCCATAGCATTGGTCGTTATTGGCCTTCTATGATTACAGATGCAAATGGATGCAGCAACACATGTGATTATCGTGGGAACTATGTAAAGGAAAAATGCAACACCAATTGCGGAAGTCCATCACAAAGGTGGTACCATGTGCCAAGGTCATTCTTGAACGATCACATGAACACATTGGTTTTGTTTGAAGAAATTGGTGGAAATCCTCAAAGTGTTCAATTCCAAACCGTAACAACGGGAACTATTTGTGCTAACGTATATGAAGGTTCCCAGTTAGAACTATCATGCCAAAATGGACAAGTAATCTCACAAATACAATTTGCTAGTTTTGGAAATCCAGAAGGTCAATGTGGATCTTTTAAAATAGGTTCATGGGAAGCTACAAATAGTCAAGATGTTTTGGAAGTTGCATGCATAGGAAAAACTAATTGTGGATTTACAGTGACAAAAGAAGTGTTTGGTGTAACGCTTAGCACAATGAGCGTTAATAATAATAATAATAATAATATAGCTAGATTAGCCGTCCAAGTGACATGTTAA 2328 0.3763 MWPDLIQKAKDGGLDAIETYIFWNRHEPVRGEYNFSENLDFIKFFKLIQEAGLYVIMRIGPYVCAEWNYGGFPLWLHNIPGIELRTDNPIYKNEMQIFTTKIVNMTKEANLFASQGGPIILAQIENEYGDIMWNYKDAGKAYVKWCAQMALSQNIGVPWIMCQQPDAPQPIINTCNGYYCRNFKPNNPKSPKMFTENWIGWFQKWGERVPHRSAEDSAYSVARFFQDGGVLNNYYMYHGGTNFGRTSGGPYITTSYDYDAPIDEYGNLNQPKWGHLKHLHSAIKLGENVLTSYSARNDTDLGNGITLTTYTNSTGARFCFLSNNDANKDANIDLHSDGKYFVPAWSVSVLNGCNKEIFNTAKVNSQTSIMVKKSDDKSSTKLTWEWKMEPKKDTMHGKGNIKAHQLLEQKELTLDASDYLWYMTSVDINDTSIWSNATLRVYTMGHTLHGYVNRRYIGYQFSQWGNKFTYEKKISLKNGTNIITLLSATVGLANYGAWFDEIKTGIPGGPVQLIGNNNVTMDLSTNPWSYKVGLNGERKHLYDLQPHVSVSWNNNSSYIPIGKPMTWYKSEFKSPLGTNPVVVDLQGLGKGHAWVNGHSIGRYWPSMITDANGCSNTCDYRGNYVKEKCNTNCGSPSQRWYHVPRSFLNDHMNTLVLFEEIGGNPQSVQFQTVTTGTICANVYEGSQLELSCQNGQVISQIQFASFGNPEGQCGSFKIGSWEATNSQDVLEVACIGKTNCGFTVTKEVFGVTLSTMSVNNNNNNNIARLAVQVTC 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05833 775 Pfam Galactose binding lectin domain 690 750 IPR000922 GO:0030246
Vifa1g05833 775 FunFam Beta-galactosidase 1 286 - -
Vifa1g05833 775 SUPERFAMILY (Trans)glycosidases 1 284 IPR017853 -
Vifa1g05833 775 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 116 128 IPR019801 GO:0004553|GO:0005975
Vifa1g05833 775 Pfam Glycosyl hydrolases family 35 1 282 IPR031330 -
Vifa1g05833 775 CDD Gal_Rha_Lectin_BGal 680 775 - -
Vifa1g05833 775 Gene3D - 540 673 - -
Vifa1g05833 775 Gene3D - 674 775 IPR043159 -
Vifa1g05833 775 SUPERFAMILY Galactose-binding domain-like 525 686 IPR008979 -
Vifa1g05833 775 PANTHER BETA-GALACTOSIDASE RELATED 2 711 IPR001944 GO:0004553|GO:0005975
Vifa1g05833 775 ProSiteProfiles SUEL-type lectin domain profile. 682 775 IPR000922 GO:0030246
Vifa1g05833 775 SUPERFAMILY Galactose-binding domain-like 348 506 IPR008979 -
Vifa1g05833 775 Gene3D Glycosidases 1 286 - -
Vifa1g05833 775 PRINTS Glycosyl hydrolase family 35 signature 230 245 IPR001944 GO:0004553|GO:0005975
Vifa1g05833 775 PRINTS Glycosyl hydrolase family 35 signature 57 76 IPR001944 GO:0004553|GO:0005975
Vifa1g05833 775 PRINTS Glycosyl hydrolase family 35 signature 2 20 IPR001944 GO:0004553|GO:0005975
Vifa1g05833 775 PRINTS Glycosyl hydrolase family 35 signature 114 129 IPR001944 GO:0004553|GO:0005975
Vifa1g05833 775 PRINTS Glycosyl hydrolase family 35 signature 193 208 IPR001944 GO:0004553|GO:0005975
Vifa1g05833 775 PRINTS Glycosyl hydrolase family 35 signature 250 266 IPR001944 GO:0004553|GO:0005975
Vifa1g05833 775 PRINTS Glycosyl hydrolase family 35 signature 563 577 IPR001944 GO:0004553|GO:0005975
Vifa1g05833 775 PRINTS Glycosyl hydrolase family 35 signature 590 606 IPR001944 GO:0004553|GO:0005975
Vifa1g05833 775 FunFam Beta-galactosidase 235 365 - -
Vifa1g05833 775 Pfam Beta-sandwich domain in beta galactosidase 294 363 IPR041392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05833 Vifa-Chr1 913399092 913401419 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05833 1 913399092 913401419 Vifa1g05833 1 913399092 913401419 ECH
Vifa1g05833 1 913399092 913401419 Vifa2g04443 2 1303876465 1303880386 PCT