Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05832 ATGCTTATTATGTTGTACTCATGTTCTGCCATAGATATCACTTATGATTCAAATGCTCTCATCATCAATGGAGAAAGGCGTCTTATTTTTTCAGGAGCAATCCATTATCCTAGAAGCACCGTGGAGATGTGGCCCGACCTTATTCAAAAGGCTAAAGATGGTGGCCTGGATGCAATTGAAACTTATATATTTTGGAATCGTCACGAACCTGTTAGAGGTGAATATAATTTCTCTGAAAATTTGGATTTCATCAAGTTTTTTAAGCTTATCCAAGAAGCTGGACTATATGTCATCATGAGGATTGGCCCTTATGTATGTGCGGAATGGAACTATGGAGGGTTCCCGTTGTGGCTTCACAATATTCCAGGGATCGAGTTAAGAACCGATAATCCAATTTACAAGAACGAAATGCAAATTTTTACCACAAAAATTGTGAACATGACAAAAGAAGCAAACTTGTTTGCATCACAAGGTGGACCCATTATTCTAGCTCAAATTGAGAATGAATATGGAGATATCATGTGGAATTACAAAGATGCTGGAAAGGCATATGTAAAATGGTGTGCTCAAATGGCTCTATCACAAAATATCGGTGTTCCATGGATCATGTGTCAACAACCTGATGCTCCTCAACCTGTCATAAATACTTGCAATGGATATTATTGTCGTAATTTTAAACCCAATAACCCAAAAAGTCCTAAAATGTTCACTGAAAATTGGATTGGTTGGTTTCAAAAATGGGGGGAAAGGGTTCCCCATAGAAGTGCTGAAGATTCAGCTTACTCTGTTGCACGTTTTTTTCAAGATGGTGGTGTATTAAACAATTACATCATGTACCATGGAGGAACCAACTTTGGACGCACATCAGGTGGACCGTATATAACCACGTCGTATGACTATGATGCCCCAATTGACGAGTATGGGAATTTGAACCAGCCAAAATGGGGACATCTTAAGCATCTTCATTCAGCAATAAAATTATGTGAAAATGTTCTTACAAGTTATAGTGCAAGGAACGACACGGATCTTGGTAATGGAATCACACTAACAACATACACTAATTCCACTGGAGCTAGATTTTGTTTCTTGAGTAATAATGACGCTAATAAAGATGCAAATATTGACTTACACAGTGATGGTAAATACTTTGTTCCTGCTTGGTCTGTCAGTGTTCTTAATGGTTGCAATAAAGAAATTTTCAATACTGCAAAGGTTAATAGTCAAACCTCAATAATGGTGAAAAAGAGCGATGATAAAAGTTCTACTAAGCTCACTTGGGAATGGAAAATGGAGCCAAAGAAAGACACCATGCATGGAAAGGGAAATATTAAAGCACACCAGCTTTTGGAGCAGAAAGAACTAACATTGGATGCTAGTGACTATTTATGGTACATGACTAGTGTTGATATCAACGACACTTCTATTTGGAGCAATGCAACTCTTCGTGTGTACACTATGGGTCATACACTTCATGGTTATGTTAATAGGAGTGCCACCGTTGGGCTTGCAAATTATGGTGCTTGGTTTGATGAGATAAAAACTGGCATACCAGGTGGTCCTGTTCAATTGATTGGAAATAATAATGTGACTATGGATTTGTCAACCAACCCTTGGTCTTATAAGGTTGGTTTAAATGGTGAGAGAAAACATCTATATGATTTGCAACCACACGTAAGTGTGTCATGGAACAATAATTCATCTTATATTCCTATCGGAAAGCCCATGACTTGGTATAAGTCTGAGTTTAAATCTCCTTTGGGAACAAACCCTGTTGTGGTTGACCTGCAAGGATTAGGTAAAGGCCATGCCTGGGTGAATGGCCATAGCATTGGTCGTTATTGGCCTTCTATGATTACAGATGCAAATGGATGCAGCAACACATGTGATTATCGTGGGAACTATGTAAAGGAAAAATGCAACACCAATTGCGGAAGTCCATCACAAAGGTGGTACCATGTGCCAAGGTCATTCTTGAACGATCACATGAACACATTGGTTTTGTTTGAAGAAATTGGTGGAAATCCTCAAAGTGTTCAATTCCAAACCGTAACAACGGGAACTATTTGTGCTAACGTATATGAAGGTTCCCAGTTAGAACTATCATGCCAAAATGGACAAGTAATCTCACAAATACAATTTGCTAGTTTTGGAAATCCAGAAGGTCAATGTGGATCTTTTAAAATAGGTTCATGGGAATCTACATTATAG 2208 0.3832 MLIMLYSCSAIDITYDSNALIINGERRLIFSGAIHYPRSTVEMWPDLIQKAKDGGLDAIETYIFWNRHEPVRGEYNFSENLDFIKFFKLIQEAGLYVIMRIGPYVCAEWNYGGFPLWLHNIPGIELRTDNPIYKNEMQIFTTKIVNMTKEANLFASQGGPIILAQIENEYGDIMWNYKDAGKAYVKWCAQMALSQNIGVPWIMCQQPDAPQPVINTCNGYYCRNFKPNNPKSPKMFTENWIGWFQKWGERVPHRSAEDSAYSVARFFQDGGVLNNYIMYHGGTNFGRTSGGPYITTSYDYDAPIDEYGNLNQPKWGHLKHLHSAIKLCENVLTSYSARNDTDLGNGITLTTYTNSTGARFCFLSNNDANKDANIDLHSDGKYFVPAWSVSVLNGCNKEIFNTAKVNSQTSIMVKKSDDKSSTKLTWEWKMEPKKDTMHGKGNIKAHQLLEQKELTLDASDYLWYMTSVDINDTSIWSNATLRVYTMGHTLHGYVNRSATVGLANYGAWFDEIKTGIPGGPVQLIGNNNVTMDLSTNPWSYKVGLNGERKHLYDLQPHVSVSWNNNSSYIPIGKPMTWYKSEFKSPLGTNPVVVDLQGLGKGHAWVNGHSIGRYWPSMITDANGCSNTCDYRGNYVKEKCNTNCGSPSQRWYHVPRSFLNDHMNTLVLFEEIGGNPQSVQFQTVTTGTICANVYEGSQLELSCQNGQVISQIQFASFGNPEGQCGSFKIGSWESTL 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05832 735 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 158 170 IPR019801 GO:0004553|GO:0005975
Vifa1g05832 735 FunFam Beta-galactosidase 277 407 - -
Vifa1g05832 735 Pfam Beta-sandwich domain in beta galactosidase 336 405 IPR041392 -
Vifa1g05832 735 SUPERFAMILY (Trans)glycosidases 13 329 IPR017853 -
Vifa1g05832 735 PRINTS Glycosyl hydrolase family 35 signature 99 118 IPR001944 GO:0004553|GO:0005975
Vifa1g05832 735 PRINTS Glycosyl hydrolase family 35 signature 573 587 IPR001944 GO:0004553|GO:0005975
Vifa1g05832 735 PRINTS Glycosyl hydrolase family 35 signature 23 40 IPR001944 GO:0004553|GO:0005975
Vifa1g05832 735 PRINTS Glycosyl hydrolase family 35 signature 156 171 IPR001944 GO:0004553|GO:0005975
Vifa1g05832 735 PRINTS Glycosyl hydrolase family 35 signature 272 287 IPR001944 GO:0004553|GO:0005975
Vifa1g05832 735 PRINTS Glycosyl hydrolase family 35 signature 600 616 IPR001944 GO:0004553|GO:0005975
Vifa1g05832 735 PRINTS Glycosyl hydrolase family 35 signature 235 250 IPR001944 GO:0004553|GO:0005975
Vifa1g05832 735 PRINTS Glycosyl hydrolase family 35 signature 292 308 IPR001944 GO:0004553|GO:0005975
Vifa1g05832 735 PRINTS Glycosyl hydrolase family 35 signature 44 62 IPR001944 GO:0004553|GO:0005975
Vifa1g05832 735 PANTHER BETA-GALACTOSIDASE RELATED 8 721 IPR001944 GO:0004553|GO:0005975
Vifa1g05832 735 CDD Gal_Rha_Lectin_BGal 690 730 - -
Vifa1g05832 735 Pfam Glycosyl hydrolases family 35 20 324 IPR031330 -
Vifa1g05832 735 SUPERFAMILY Galactose-binding domain-like 535 696 IPR008979 -
Vifa1g05832 735 Gene3D - 549 688 - -
Vifa1g05832 735 Gene3D Glycosidases 11 328 - -
Vifa1g05832 735 FunFam Beta-galactosidase 9 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05832 Vifa-Chr1 913331406 913333709 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05832 1 913331406 913333709 Vifa1g05832 1 913331406 913333709 ECH
Vifa1g05832 1 913331406 913333709 Vifa2g04414 2 1294330078 1294333478 PCT