Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05697 ATGTTGGAAGCTAGAGACCCTGCGATCAAGCTTTTTGGGAAGACGATTCCGGTGCCGGAGGTCTCTTCCGGATCCGGTGACTCCACCGGAGCTCCGGATTCATCTTGTGGTGATGTTGTTGATGAAGGTATCGTTCAGAACCATGCTTCTTCTGTTAACTCTTTGAATACAAATATGGATGAAGAAGAGCGAGAAATTGATGAGGGCACAATGGAAGAGGAACTGGCTGAGTATGAGAAGGAAAAAGATGAAGCTCTTACCGAATTGTCAAAAAAGAACACTGATATAAACTCTGCTTCAAGATTAGTGGAAGAATCTATTAACCTCTCTGCCGAGGAGGAGCAAAAGAGTAAAGAAGAACAAGCTGAGAATTCACAAGATAAGACACTGAAAAAGCCAGACAAAATACTTCCTTGCCCCCGATGTAATAGCATGGACACCAAATTCTGCTACTACAATAACTACAATGTCAATCAGCCGCGTCATTTCTGTAAGAACTGTCAAAGATACTGGACAGCCGGTGGAGCCATGAGAAACGTGCCTGTTGGCGCCGGTCGCAGGAAGAACAAGAATCTCGGTTCTCAGTATCGTCAAGTTACTGTCCCGGAAGCGGGAGTTCAGAATTCTCAATCCGACATGTCAAACGGAGTCCATCATCCTTCCTTGAACTGTAACGGAACAGTCTTTAAGTTCGCGACTGATTCACCGTTGTGTGAATCAATGGAATCTGCGCTGAACCTTGCTGATAAAAGAATTAGCATATCCCCGAAAAATGGATTCATTAGACCTGAAGAACTAAGAATCCATGTTCCTTATACTGGTGAAGAAAAGAGCAATGATGATTCCAATAAATCTTCTGACGGATCAACGATCCAGACAGAAAATGCAACTGCCAACAATTCTACCCGGGTTCCCGCGAATCTTCTGACGGAACAAGTTATACCGAATTGTCAAAGCTTCCCACCTCAAGTTCCCTACTACCCGGGTGCCCCTTGGCTTTTCCCGTGGAATCCAGCTCAATGGAGCTCTCAAGTACAATCACCGCCTGCTTTTTTCCCACAAGGATTCGCCGTGCCACTCTATCCTCCACCAGCTTATTGGGGTTTTACTGTGCCCGGTGCTTGGAACAATCCATGGCTAGCGCAACCGTCTTCGCCAAATAGTGCAGCCCTTAACTCCGGTCCTAACTCGCCGACCTTAGGGAAGCATTCCAGGGAAGAAACCACGGCCATACCGAATGATGCAGCAGGTTCTGAAGAAGGAAATAATAAAGAAGAAAAGTCACTTTGGGTTCCCAAAACATTGAGGATTGATGACTTAGGAGAAGCAGAAAAAAGCTCTATATTGACAACTCTAGGGATTAAAAACAATAAGACAGACTTGATTCGCGGAGGAGGAGGACTTTTCAAAGCATTCGCGTCAAAGGGTGACGAAAAAGATGACATGCAAAACTCAAACTCACCTGTCTTGCAGGCCAATCCAGCAGCATTGTCTAGGTCAATTAACTTCCGCGAGACGTCATAA 1524 0.4541 MLEARDPAIKLFGKTIPVPEVSSGSGDSTGAPDSSCGDVVDEGIVQNHASSVNSLNTNMDEEEREIDEGTMEEELAEYEKEKDEALTELSKKNTDINSASRLVEESINLSAEEEQKSKEEQAENSQDKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKNKNLGSQYRQVTVPEAGVQNSQSDMSNGVHHPSLNCNGTVFKFATDSPLCESMESALNLADKRISISPKNGFIRPEELRIHVPYTGEEKSNDDSNKSSDGSTIQTENATANNSTRVPANLLTEQVIPNCQSFPPQVPYYPGAPWLFPWNPAQWSSQVQSPPAFFPQGFAVPLYPPPAYWGFTVPGAWNNPWLAQPSSPNSAALNSGPNSPTLGKHSREETTAIPNDAAGSEEGNNKEEKSLWVPKTLRIDDLGEAEKSSILTTLGIKNNKTDLIRGGGGLFKAFASKGDEKDDMQNSNSPVLQANPAALSRSINFRETS 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05697 507 MobiDBLite consensus disorder prediction 110 134 - -
Vifa1g05697 507 MobiDBLite consensus disorder prediction 384 406 - -
Vifa1g05697 507 MobiDBLite consensus disorder prediction 477 507 - -
Vifa1g05697 507 PANTHER CYCLIC DOF FACTOR 2 4 507 IPR045174 GO:0003700|GO:0006355
Vifa1g05697 507 MobiDBLite consensus disorder prediction 61 79 - -
Vifa1g05697 507 Coils Coil 108 128 - -
Vifa1g05697 507 MobiDBLite consensus disorder prediction 14 92 - -
Vifa1g05697 507 Coils Coil 45 95 - -
Vifa1g05697 507 MobiDBLite consensus disorder prediction 272 303 - -
Vifa1g05697 507 Pfam Dof domain, zinc finger 134 191 IPR003851 GO:0003677|GO:0006355
Vifa1g05697 507 ProSiteProfiles Zinc finger Dof-type profile. 137 191 IPR003851 GO:0003677|GO:0006355
Vifa1g05697 507 MobiDBLite consensus disorder prediction 483 507 - -
Vifa1g05697 507 MobiDBLite consensus disorder prediction 284 303 - -
Vifa1g05697 507 ProSitePatterns Zinc finger Dof-type signature. 139 175 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05697 Vifa-Chr1 882899372 882902091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05697 6 507 C2C2-Dof Transcription Factor Family AT5G39660 40.307 1.74e-99 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vifa1g05697 zf-Dof 2.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05697 - - mtr:11414470 761.525