Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05536 ATGGCGTCACAAATGGCGATCCTAAATCGAACTCGTTCTCTTCTCACAAAATCCAAATTAACCAACATCACAATCAAAACCATTTCAACTTTCCCATTTCTCAACCAAGAACCCGAACTCGCAGAACCAACACTCACACCAACACCTTCATCTCTTCCTCCAAATCCCGCTTCCGGAAGCCCACTCTACAACGAGAATTGGCGAAATCCTCTCCCCAAACCCCTATCCTCAAACTCAAACGCGGTAGCTCCGTTTGGTCTCGTCACTCGCGCTTCACTCTCTGAAACCTACGATTCCCACGCGCTTCTCAACATGTTCGGGGATTGGATGGCGTCGCAACAGTGGCATGATGTGAAGGATTTGTTTGAGGCTTGGGTTAGGTCGTTGGATAAAAATGGGAAACCTAATAAGCCTGATGTGAATCTGTTTAATCATTATCTTAGGGCGAATCTTATGATGGGAGCTTCTGCTGCTGATTTGCTTGATTTGTTAGCTCAGATGGAGCATTTTGAGATTTTGCCGAATACAGCGTCGTTTAATTTGGTTCTTAAGGCTATGCATCAGGCTGGTGAAACGCTTGCTGCTGAAAAACTTCTCGAACGGATGCTGCAGTCAGGAAATGAAGCTCTCCCTGATGATGAATCATATGACTTGGTCATCGGAATGCTCTTTTCAACCGATCAGATTGATGCTGCGTTCAAATATATAGATTTAACTCTGAAACATGGTAACGTGTTGTCAATGAATTTATTTATGAACTGTGTGAGGAGTTGTGTCAAACAGGGAAGACTTGACACGTTGGTGGCAATAATTGACAAGTGCAGGGCAACAGATCAAAACAAAGCCCTTTGCCCCTCGTGGAACTTGTGTATTTTTATAGCTGAAGTTGCAATTCGAGAGGATAATAGCAAGTTAGCCTATTATGGCCTGGAATTTATGGCCCGATGGATTGTTAAGGGTGAACATGCAAGACCTCCTGTGTTGCTTTCTGTAGATGAAGGTTTAGTCGTGTCAGCTTTGTTGACTGCAGGTAGAACCTATAATTCTGAGCTGCTAGGAGCGGCATGGGCTGTTTTGGACCGCTCATTGCGTAAAAAGAAGTTACCGAACCCAGAATCTTATCTTGGAAAGATGTATGCCCTTGCATCATTGGGGAATTTACAAAAGGCATTTGGTGCTCTCCATGAATATGAGTCTGCTTATGGAGATTCCAATCAAGAAGCTGATGACTTATTCTGCCCATTTACTTCTTTACATCCATTGGTTGTGGCATGCTCCAAGAAGGGTTTTGAGACTTTGGATACTGTTTATTTTCAACTGGAGAATTTAAGCCGCGCTGAGCGTCCTTACAAGTCTGTTGCTGCGCTGAACTGCATCATTTTAGGATGTGCTAACATATGGGACCTTGATCGAGCTTACCAAACTTTTGAATCAATTGGATCTGCTTTTGGGCTGACGCCTGATATTCATTCGTACAATGGGCTGATGTATGCCTTTGGGAAGCTCAAGAAGACACATGAAGCTTCAAAGGTGTTCGAGCACCTAGTAAGTTTAGGTGTCAAGCCTAATGCAAAGTCATATACCCTGCTTGTTGATGCTCACCTGATTAACCGAGATGTCAAATCTGCTCTAGCCGTGATTGATGATATGACAGCTGCTGGATTTGAACCTTCAAAAGTAACCCTAAAAAAGTATGGATATGGCTTGAGTGGTTCATCCGTCTATGATGTCAAAATGAATTATTTTATAAGCCGATCGCTGGAAGGGCGTTGA 1773 0.4343 MASQMAILNRTRSLLTKSKLTNITIKTISTFPFLNQEPELAEPTLTPTPSSLPPNPASGSPLYNENWRNPLPKPLSSNSNAVAPFGLVTRASLSETYDSHALLNMFGDWMASQQWHDVKDLFEAWVRSLDKNGKPNKPDVNLFNHYLRANLMMGASAADLLDLLAQMEHFEILPNTASFNLVLKAMHQAGETLAAEKLLERMLQSGNEALPDDESYDLVIGMLFSTDQIDAAFKYIDLTLKHGNVLSMNLFMNCVRSCVKQGRLDTLVAIIDKCRATDQNKALCPSWNLCIFIAEVAIREDNSKLAYYGLEFMARWIVKGEHARPPVLLSVDEGLVVSALLTAGRTYNSELLGAAWAVLDRSLRKKKLPNPESYLGKMYALASLGNLQKAFGALHEYESAYGDSNQEADDLFCPFTSLHPLVVACSKKGFETLDTVYFQLENLSRAERPYKSVAALNCIILGCANIWDLDRAYQTFESIGSAFGLTPDIHSYNGLMYAFGKLKKTHEASKVFEHLVSLGVKPNAKSYTLLVDAHLINRDVKSALAVIDDMTAAGFEPSKVTLKKYGYGLSGSSVYDVKMNYFISRSLEGR 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05536 590 Gene3D Tetratricopeptide repeat domain 101 303 IPR011990 GO:0005515
Vifa1g05536 590 Pfam PPR repeat family 487 533 IPR002885 -
Vifa1g05536 590 Gene3D Tetratricopeptide repeat domain 433 572 IPR011990 GO:0005515
Vifa1g05536 590 PANTHER OS07G0599000 PROTEIN 1 564 IPR044605 -
Vifa1g05536 590 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Vifa1g05536 590 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 523 557 IPR002885 -
Vifa1g05536 590 Pfam Pentatricopeptide repeat domain 137 186 IPR002885 -
Vifa1g05536 590 MobiDBLite consensus disorder prediction 40 70 - -
Vifa1g05536 590 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 488 522 IPR002885 -
Vifa1g05536 590 NCBIfam pentatricopeptide repeat 526 558 IPR002885 -
Vifa1g05536 590 NCBIfam pentatricopeptide repeat 490 524 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05536 Vifa-Chr1 859011639 859015714 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05536 1 859011639 859015714 Vifa1g05536 1 859011639 859015714 ECH