LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g05514	ATGGAGGAGAAGAGGTTTGAGTGTAGGTATTGTTTTCGGAAGTTTCTTTGCGGTAAGTCTCTTGGTGGTCACATAAGGACTCATATGATGAGTGAGAATGAAGAGAGAAGAATAATGAATGCTAATGCTGCTGCTTCTGTGTTTAAGTTTGATGATGGAAGAAAGAGAAAGAGATCTGAATTAGGGTCTAGTAGTGTTGGTGGTGATGATGGAAACTACATTTATGGTCTTAGAGAGAATCCCAAGAAAACAACTAGGTTTGTGCATTCCAATGCTGCTGCTGTTTCTTCTGCTACTGTTCAGATTGAAAGATTCTGCAAAGAATGTGGAAAAGGCTTTCCGTCGTTGAAAGCTTTATGTGGTCACATGGCTTCTCATTCGGAGAAAGAGAAAGTAATATCTCGGATTGAAGACGTGTCTGGTGTCAGAGATGGTCAGTCGGATACTGAGGATTCGGTTCCGACTGATACTCGGAAATCAAAGAGAATGAAGCTTAAGATTATTAGTAATGAGAATAGGCCGTCTTCGTCTTCGCCTCCGTGGGGAAACTGTTCTTCTTCGATTTCGGAAGTTGATCAAGATCATGAAGAAGTTGCTAGGACTTTGATGATGTTGTCTAGAGATCATACCTTCAAGGGTCCGTTTGCTTTGGTGGCAGACTCTTCTGATAACAACTCTGTTGTTGTAGAACCCGAAGCGAAATTGAAACTGAAATTGAAATTGAAATTGAAATCGAAATCGAATTCGCCTGATGTTGATACTAAGGTTGTTGGTATGAATCATGGCAAGACCTTTGTGACGATCAATGGTGTGAAGATGAAGAATTATGGAGAGGGTTATGATTCTGATAACTCTGATTCTGGTTATTTCCTACACGGTCCTAAAAAGGTAGAATCAGATGATGCTTCAAGCGATTGGTGTTTGAAGAATCGATTTCAAGATGATGATTTAGAATCAAGTAAGAAGATAGTAGAAAGCAATAAGAACAATGGTTATGGTAATAATGAAATGTATTCGAGTTTGAAGACTCAAAGAGAGAGTTTCTCGGATGATTCGGTTTACGAGAGTGATGAAAACAGCACTGATAGTGATTCATATACTGCTCCAAAGACACAAACCAACAACAAGAGCAACATGAATGGAACAAAGAGTGGTAACAATAACAAGAAGCCAAGTTGCAAAGGGAAGAAGAAAATGAAGTCAAAGAAAGGCAAAGAACATGATTGTCCACTTTGCCCCAGGACTTTCAAGTCAGGACAAGCTTTAGGAGGCCACAAAAGATCACATTTTGCAACTGGAGTTTCAACTCAGGACACTCTTGTCATTAGACCAGGTGCTGCTGCTGCTTCTCAAGCTCAAGCTCAAGCTCTTGCTCCGGTTCCGGTTCCCGCTCCGGCTCCGGCTGCAGTTAATGCTTGCTTGATTGATCTTAATCTACCTGCTCCTGATGATGAATAG	1458	0.4081	MEEKRFECRYCFRKFLCGKSLGGHIRTHMMSENEERRIMNANAAASVFKFDDGRKRKRSELGSSSVGGDDGNYIYGLRENPKKTTRFVHSNAAAVSSATVQIERFCKECGKGFPSLKALCGHMASHSEKEKVISRIEDVSGVRDGQSDTEDSVPTDTRKSKRMKLKIISNENRPSSSSPPWGNCSSSISEVDQDHEEVARTLMMLSRDHTFKGPFALVADSSDNNSVVVEPEAKLKLKLKLKLKSKSNSPDVDTKVVGMNHGKTFVTINGVKMKNYGEGYDSDNSDSGYFLHGPKKVESDDASSDWCLKNRFQDDDLESSKKIVESNKNNGYGNNEMYSSLKTQRESFSDDSVYESDENSTDSDSYTAPKTQTNNKSNMNGTKSGNNNKKPSCKGKKKMKSKKGKEHDCPLCPRTFKSGQALGGHKRSHFATGVSTQDTLVIRPGAAAASQAQAQALAPVPVPAPAPAAVNACLIDLNLPAPDDE	485

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g05514	485	ProSiteProfiles	Zinc finger C2H2 type domain profile.	407	429	IPR013087	-
	Vifa1g05514	485	MobiDBLite	consensus disorder prediction	168	193	-	-
	Vifa1g05514	485	Pfam	C2H2-type zinc finger	407	429	-	-
	Vifa1g05514	485	Pfam	C2H2-type zinc finger	106	128	-	-
	Vifa1g05514	485	ProSitePatterns	Zinc finger C2H2 type domain signature.	8	28	IPR013087	-
	Vifa1g05514	485	ProSiteProfiles	Zinc finger C2H2 type domain profile.	104	131	IPR013087	-
	Vifa1g05514	485	ProSitePatterns	Zinc finger C2H2 type domain signature.	106	126	IPR013087	-
	Vifa1g05514	485	MobiDBLite	consensus disorder prediction	141	160	-	-
	Vifa1g05514	485	ProSitePatterns	Zinc finger C2H2 type domain signature.	409	429	IPR013087	-
	Vifa1g05514	485	SMART	c2h2final6	6	28	IPR013087	-
	Vifa1g05514	485	SMART	c2h2final6	407	429	IPR013087	-
	Vifa1g05514	485	SMART	c2h2final6	104	126	IPR013087	-
	Vifa1g05514	485	SUPERFAMILY	beta-beta-alpha zinc fingers	2	31	IPR036236	-
	Vifa1g05514	485	MobiDBLite	consensus disorder prediction	359	389	-	-
	Vifa1g05514	485	PANTHER	C2H2-LIKE ZINC FINGER PROTEIN	1	485	-	-
	Vifa1g05514	485	ProSiteProfiles	Zinc finger C2H2 type domain profile.	6	33	IPR013087	-
	Vifa1g05514	485	MobiDBLite	consensus disorder prediction	169	189	-	-
	Vifa1g05514	485	MobiDBLite	consensus disorder prediction	344	408	-	-
	Vifa1g05514	485	SUPERFAMILY	beta-beta-alpha zinc fingers	105	429	IPR036236	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g05514	Vifa-Chr1	856049356	856050813	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Vifa1g05514		zf-C2H2_6	6e-08	CL0361

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa1g05514	1	856049356	856050813	Vifa1g05514	1	856049356	856050813	ECH