Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05325 ATGTCTCAGATGATTAATGATTCGACAACCATAAAACTTTTTGGGACAACCATTTTTTTGACACACAACATCTATGTCTCTACCAATTATTCTTCCTCAAAACCTCCTCATGAAGATTTCTCTGATCATAGTCTTCATTCATCTGTATCTTCATCTTCTCCACTTGATGTAATCGTTTCACAACAAACCACAGAGGATTTAAACACTCCCTCAGCGGAAACAGAAGCTTCACAACAGTCTTCCACAAAACTTGATGAACAAAGTGATATGTCACAAGACAAATCTCCAAAGAAACCAGACAAAATTGTTCCATGTCCAAGATGCAAAAGCATGGACACAAAGTTTTGCTACTACAACAACTACAACGTCAAACAGCCCCGGCACTTCTGCAAAAACTGCCAGAGATACTGGACTTCCGGAGGAACCGCGAGAAAGATGCTTGTAGGAGCAGGTCGCCGTAAGAACAAAGTCACTTCTTTTTCTTCCAATGTCTTGCATTATCCTCAAATGAGTACTGTCTTGACCTTTGGATCAAATTCTTCTAATATAACATACTATCGTGGTTTCTTGCAACCATTATGGAATGTACAATCTATCCCAACACAATCTTGTGGCCCAAGTAAACCTTCATTAGGGAAACATTCAAGAGATGGAGATATGATCATTCATCCCAACTCAGAGAAAGAAAAACTTGGATTAGAAAGTAACAACAAAGAAAGTAATGATACTAATGAAGTGTTGATTCCTAAGGTACTGAGATTTGATAATGATGTTGCAAGGAGTTCTATATGGTCAACAATAGGAACCAAGAATGGAGGAGGAATTTTCAAGGGATTTGGATCTAACTGTGACAAGAAGAATAATGTGGTTGAAGCATCTTCATCAATATTGAAAGCTAACCCAGCAGCTTTATCAAGATTTATTGTGTTCCACGAGAGAATTTGA 945 0.3788 MSQMINDSTTIKLFGTTIFLTHNIYVSTNYSSSKPPHEDFSDHSLHSSVSSSSPLDVIVSQQTTEDLNTPSAETEASQQSSTKLDEQSDMSQDKSPKKPDKIVPCPRCKSMDTKFCYYNNYNVKQPRHFCKNCQRYWTSGGTARKMLVGAGRRKNKVTSFSSNVLHYPQMSTVLTFGSNSSNITYYRGFLQPLWNVQSIPTQSCGPSKPSLGKHSRDGDMIIHPNSEKEKLGLESNNKESNDTNEVLIPKVLRFDNDVARSSIWSTIGTKNGGGIFKGFGSNCDKKNNVVEASSSILKANPAALSRFIVFHERI 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05325 314 PANTHER CYCLIC DOF FACTOR 2 188 313 IPR045174 GO:0003700|GO:0006355
Vifa1g05325 314 MobiDBLite consensus disorder prediction 45 86 - -
Vifa1g05325 314 MobiDBLite consensus disorder prediction 87 101 - -
Vifa1g05325 314 ProSitePatterns Zinc finger Dof-type signature. 105 141 IPR003851 GO:0003677|GO:0006355
Vifa1g05325 314 ProSiteProfiles Zinc finger Dof-type profile. 103 157 IPR003851 GO:0003677|GO:0006355
Vifa1g05325 314 MobiDBLite consensus disorder prediction 31 101 - -
Vifa1g05325 314 Pfam Dof domain, zinc finger 100 156 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05325 Vifa-Chr1 828013150 828014094 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05325 72 314 C2C2-Dof Transcription Factor Family AT5G62430 40.068 3.01e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vifa1g05325 zf-Dof 7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05325 - K16222 psat:127119499 437.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05325 1 828013150 828014094 Vifa1g05325 1 828013150 828014094 ECH