Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05323 ATGATCAATGATTCAACAACCATAAAACTTTTTGGAAGAATCATTTTTCTGACACACAAAAACTATGTCTCTGCCAGTGATTGTTCCTCAAATTTCCTCCCTCCACTTCCTCATGAAGATTACTGTGATCATAGTCTTCATTCATCTGTGTCTTCATCTTCTCCACTTGATGAGGTCTCACAACAAACCACAGATTTAAACACACCCTCAGCTGAAACAGAAGCTTCACACCAAAATTTCACTAAACTTGATGAACAAAGTGATATCTCACAAGACAAATCTCCAAAGAAACCGGACATTATTGTTCCATGTCCAAGATGCAAAAGCATGGACACAAAGTTTTGCTACTACAACAACTACAACGTCAAACAGCCCCGGCACTTCTGCAAAAATTGCCAGAGATACTGGACTTCCGGAGGAACCGCGAGAAAGATGCTTGTAGGAGCAGGTCGCCGTAAGAACAAAGTCACTTCTTTTTCTTCCAATGTCTTGCATTATCCTCAAATGAGTACTGTCTTGACCTTTGGATCAAATCCTTCTAATATAACATACTATCGTGGTTTTTTGCAACCATTATGGAATGTACAATCTTGTGGCCCAAGTAAACCTGCATTAGGGAAACATTTAAGAGATGGAGACATGATCAATCGTTCCAACTCAGAGAAATTAAAGCTTGGATTAGAAAGCAACAACAAAGAAAGTAATGATACTAATGAAGTATTTATCCCTAAGTTAATGAGATTTGATGACCCTAATGATGTAGCAAAGAGTTCTATACGGTCAACATTAGGAATCAAGAATGGGAGAGGACTTTTCAAGGGATTTGTATCTAACTGTGATCGCAAGAATCATGGGGTTGAATCATCTTCATCAGTATTGAAAGCTAACCCAGCAGCTTTATCAAGGTGTATTGTGTTCCACGAGAGAATTTGA 933 0.3848 MINDSTTIKLFGRIIFLTHKNYVSASDCSSNFLPPLPHEDYCDHSLHSSVSSSSPLDEVSQQTTDLNTPSAETEASHQNFTKLDEQSDISQDKSPKKPDIIVPCPRCKSMDTKFCYYNNYNVKQPRHFCKNCQRYWTSGGTARKMLVGAGRRKNKVTSFSSNVLHYPQMSTVLTFGSNPSNITYYRGFLQPLWNVQSCGPSKPALGKHLRDGDMINRSNSEKLKLGLESNNKESNDTNEVFIPKLMRFDDPNDVAKSSIRSTLGIKNGRGLFKGFVSNCDRKNHGVESSSSVLKANPAALSRCIVFHERI 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05323 310 ProSiteProfiles Zinc finger Dof-type profile. 102 156 IPR003851 GO:0003677|GO:0006355
Vifa1g05323 310 MobiDBLite consensus disorder prediction 52 97 - -
Vifa1g05323 310 MobiDBLite consensus disorder prediction 78 95 - -
Vifa1g05323 310 Pfam Dof domain, zinc finger 101 155 IPR003851 GO:0003677|GO:0006355
Vifa1g05323 310 PANTHER CYCLIC DOF FACTOR 2 190 309 IPR045174 GO:0003700|GO:0006355
Vifa1g05323 310 ProSitePatterns Zinc finger Dof-type signature. 104 140 IPR003851 GO:0003677|GO:0006355
Vifa1g05323 310 MobiDBLite consensus disorder prediction 52 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05323 Vifa-Chr1 827491997 827492929 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05323 72 310 C2C2-Dof Transcription Factor Family AT5G62430 42.268 1.92e-51 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vifa1g05323 zf-Dof 7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05323 - K16222 psat:127119499 402.134