LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g04378	ATGTGTAGCTTTAAGGCTAAAGAAACTATGGTCATAGAATCTTCCACAACACCTCCTCATGTAATTTCTAGGATCAATGGAAGACAAGTACTTCAACCAACATGCAACCATGTTGTTGTTCCAAATCTTGAAAGAAGAAACTCAATGAAAAAAATAACATCAAAATCACTTTTTTCACCACCTCTTCCAAACAAAACTACTTCATTGTCACCACCAATTTCTCCAAAACCAATCTCTCCTACTAGACCATTCCTAGCTATAAAGAGAGGAAATGACAATAATGGAATGAACTCAAGTTGTGAAAAGCTTGTTATACCAAAGAACACAATGAGAACTCCATGCTTAGAGAGGAAGAAATCAAAGAGTTTCAAAGAAGGGTCTTATGGTGTTGAAGCTTCCTTGAGTTATTCTTCTTCTTTGATCACTGATTCTCCAGGAAGTATAGCTGCAGGGAGAAGGGAACAGATGGCACTTCAACAGGCTCAAAGGAAAATGAAGATTGCTCATTATGGAAGATCGAAGTCCGCGAAATTCGAAAGAGTTTTTCCTATTGATCCTTCTAGTGCTCTTGATTTAAAGACTAGTAATGAAGAGGAGAAAAGGTGTAGCTTTATCACAGCCAATTCAGATCCTATCTATATTGCTTATCATGATGAAGAATGGGGAGTTCCAGTTCATGATGACAAGATGTTGTTTGAACTTCTAATTCTAAGTGGTGCTCAAGTTGGATCTGATTGGACCTCAACCTTGAAAAAACGCCTAGATTTCAGGACTGCATTTTCAGAATTTGATGCAGAAATTGTGGCCAACTTTTCTGATAAACAAATGATATCTATTAGTTCAGAATATAGAATTGATATAAGCAAAGTTAGAGGAGTTGTTGACAATGCTAACCAAATTTTACAAGTTAAAAAAGGGTTTGGTTCATTTGACAAATACATATGGGGATTTGTGAATCAAAAACCAATCTCAACTCAATACAAATTTGGCCACAAGATTCCAGTGAAGACATCAAAATCAGAAAGCATAAGCAAAGACATGATTAGGAGAGGTTTTAGGTTTGTTGGTCCAACAGTGGTTCATTCATTTATGCAGGCAGCTGGCCTAACAAATGACCACTTAATCACTTGCCATAGGCACTTGCAATGCACTTTCTTGGAAGCTATATAA	1170	0.3667	MCSFKAKETMVIESSTTPPHVISRINGRQVLQPTCNHVVVPNLERRNSMKKITSKSLFSPPLPNKTTSLSPPISPKPISPTRPFLAIKRGNDNNGMNSSCEKLVIPKNTMRTPCLERKKSKSFKEGSYGVEASLSYSSSLITDSPGSIAAGRREQMALQQAQRKMKIAHYGRSKSAKFERVFPIDPSSALDLKTSNEEEKRCSFITANSDPIYIAYHDEEWGVPVHDDKMLFELLILSGAQVGSDWTSTLKKRLDFRTAFSEFDAEIVANFSDKQMISISSEYRIDISKVRGVVDNANQILQVKKGFGSFDKYIWGFVNQKPISTQYKFGHKIPVKTSKSESISKDMIRRGFRFVGPTVVHSFMQAAGLTNDHLITCHRHLQCTFLEAI	389

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g04378	389	PANTHER	OS04G0501200 PROTEIN	22	384	-	-
	Vifa1g04378	389	Gene3D	Hypothetical protein; domain 2	199	381	-	-
	Vifa1g04378	389	SUPERFAMILY	DNA-glycosylase	200	383	IPR011257	GO:0003824\|GO:0006281
	Vifa1g04378	389	MobiDBLite	consensus disorder prediction	65	79	-	-
	Vifa1g04378	389	Pfam	Methyladenine glycosylase	207	380	IPR005019	GO:0006284\|GO:0008725
	Vifa1g04378	389	MobiDBLite	consensus disorder prediction	55	80	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g04378	Vifa-Chr1	680504249	680506101	Dispersed

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa1g04378	1	680504249	680506101	Vifa4g00400	4	106670609	106672253	PCT