Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03517 ATGGTTACAACTACGGCAATTATTCTCTTCACTGTCTTGACAACACTTGCTTTTACATGGTCATGGAAGATTCTGAATTGGTTATGGTTGAAGCCAAAGAAGCTAGAAAAGGTTCTGAGAGATCAAGGACTTAAAGGGAATTCGTATAGGTTCTTAGTTGGAGACATAAAAGATATTGTGAAGTCGCGAAAAGAAGCAACATCTAAACCCATGAGTCTTTCTGATGATATTGTTCCTCGTGTGTTTTCCTATTTCCAACAAAGTGCTATAAAACATGGTAAGAACTATTTTGTTTGGTTTGGACCAACGCCAAGGGTAACCATCACAGATCCTGAGCTAATTAAAGATGTACTTAACAAAAACAACGACTTCCGAAAGCCTAATACAAATCCACTTGTCAGGTTACTAGCTAATGGTCTAGTAAACCTCGAGGGAGAACAGTGGAGCAAGCACAGAAAGATAATCAATCCAGCATTCCATTTTGAAAAACTGAAGATCATGTTACCAAATTTCTTCAAAAGTTGTGATGATCTCATTAGCAAATGGGAGACAATGTTGTCATCAGATGGATCATGTGAAATGGACGTATGGCCTTTCCTTCAAAACTTGGCAAGTGATGTTATTTCGCGAACAGCATTTGGAAGTAGTTATGAAGAAGGAATGAGAATATTTCAACTTCAAATCGAGCAAGCTGAACTTACAAAAACAGTTATGATGAATGTTTACATCCCTGGATGGAGTTTTCTACCAACTCCAACCCATAGGAGGATGAAGGAAATTGACAGAGATGTAAAAGCTTCACTTAGAAATATGATTAACAAGAGGGAGAAAGCACTAAAGGCAGGCGAAGCAACTAAGGATGATTTGTTAAGTATACTCTTGGAGTCAAATCACAAGGTAATGGAAGAACATGGAAACAATAAGAATGTCGGAATGAGTCTTGAAGATGTAATAGAGGAATGCAAGCTATTCTACTTTGCAGGGCAAGAGACGACTTCGGTTTTGCTTGTTTGGACAATGGTGTTGTTGAGTAGGTACCCTGATTGGCAAACACGTGCAAGAGAGGAAGTATTACAAGTTTTCGGTAAAGAAAAACCTGATTTTGATGGGCTAAGTCATCTAAAGATTGTCACCATGATTTTCAATGAGGTGCTTCGATTATATCCTCCAGTACTCGCGCTTGCTCGAACTGTTCACAAAGATATGAAACTTGGGAACTTGACATTACCCGCTGGAGTGCAGGTTCTCTTATCGATAATTTTGGTTCACCATGACTCAAAAATATGGGGAGATGACGCTACGATGTTCAATCCTGAAAGATTTTCTGAAGGTGTTTTGAAAGCAACGAACGGAAGATATTCATTTTTCCCATTTGGAGGGGGTCCTAGAATTTGCATTGGACAAAACTTTGCCATGATGGAAGCAAAGATTGCAATTGCAATGATTTTACAACATTTCTCATTTGAACTTTCACCAACCTATACTCATGCTCCTTCTACGGTGATTACACTTCAACCGCAATATGGTGCTCATATAATTCTTCGTAAAGTGGAAATATAA 1560 0.3846 MVTTTAIILFTVLTTLAFTWSWKILNWLWLKPKKLEKVLRDQGLKGNSYRFLVGDIKDIVKSRKEATSKPMSLSDDIVPRVFSYFQQSAIKHGKNYFVWFGPTPRVTITDPELIKDVLNKNNDFRKPNTNPLVRLLANGLVNLEGEQWSKHRKIINPAFHFEKLKIMLPNFFKSCDDLISKWETMLSSDGSCEMDVWPFLQNLASDVISRTAFGSSYEEGMRIFQLQIEQAELTKTVMMNVYIPGWSFLPTPTHRRMKEIDRDVKASLRNMINKREKALKAGEATKDDLLSILLESNHKVMEEHGNNKNVGMSLEDVIEECKLFYFAGQETTSVLLVWTMVLLSRYPDWQTRAREEVLQVFGKEKPDFDGLSHLKIVTMIFNEVLRLYPPVLALARTVHKDMKLGNLTLPAGVQVLLSIILVHHDSKIWGDDATMFNPERFSEGVLKATNGRYSFFPFGGGPRICIGQNFAMMEAKIAIAMILQHFSFELSPTYTHAPSTVITLQPQYGAHIILRKVEI 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03517 519 CDD CYP72 82 513 - -
Vifa1g03517 519 SUPERFAMILY Cytochrome P450 79 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03517 519 PRINTS E-class P450 group I signature 336 362 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03517 519 PRINTS E-class P450 group I signature 89 108 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03517 519 PRINTS E-class P450 group I signature 316 333 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03517 519 PRINTS E-class P450 group I signature 455 465 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03517 519 PRINTS E-class P450 group I signature 465 488 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03517 519 PRINTS E-class P450 group I signature 203 221 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03517 519 Gene3D Cytochrome P450 14 518 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03517 519 PANTHER CYTOCHROME P450 FAMILY MEMBER 20 510 - -
Vifa1g03517 519 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 458 467 IPR017972 GO:0005506|GO:0016705
Vifa1g03517 519 Pfam Cytochrome P450 81 494 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03517 519 PRINTS P450 superfamily signature 327 344 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03517 519 PRINTS P450 superfamily signature 456 465 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03517 519 PRINTS P450 superfamily signature 465 476 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03517 519 PRINTS P450 superfamily signature 379 390 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03517 519 FunFam Cytochrome P450 734A1 29 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03517 Vifa-Chr1 545845242 545847779 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03517 1 517 Cytochrome P450 AT3G14690 56.757 0.0 621
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03517 1 545845242 545847779 Vifa1g03517 1 545845242 545847779 ECH