Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01997 ATGTCTTCCTCAAATTTGTTCACAACTATTACCATCTCACTAACCCTAGCTCTCATTCTCCAAACATCTTTTGCACTCACTAGCCCTCTCTCCCACATTTGTTCAACTAGTGAAAACTTCACATCTTACACCCCTTATGAATCAAATTTGAAAACACTCATTAACTCACTTATCTATAAGACACCTTCAACGGGTTTTGGCATTGGATCAGCCGGTCTGACCCAATACCAAAACCAACAAGCATACGGCCTCGCTATTTGTCGTGGAGATGTATCGACCTCACAATGCAAGACTTGTGTTTCAGAAGCAACTAAAGAAATTCTAAATCTTTGTCCATTCAATAAGGGTGCTATTATATGGTACGATAACTGCATGTTCAAGTACTTGGACAATGATTTCTTTGGCAAAATTGATAACTCAAACAAGTTCTCTTTATTGAATGTACAAAATGTTGATGATCCTATCAAATTCAACAACGTCACTAAGGACTTATTGAGCCTACTTGCTTATGAGGCTTCTATGGATAAGAAAATGTATGCGAATGGAGAGTTGAAGATTGGAGAATTAGAGAGAGTTTATGGACAAGCTCAATGCACTAGAGACCTGTCTAGTGTTGATTGTAAGAAGTGTCTTGATGATGCAATTACTGAAATTCCAAATTGTTGTGATGGAAAAAAAGGAGGAAGAGTTGTTGGTGGAAGTTGTAACGTTAGATATGAAATTTACCCGTTTGTTAGGGAGTAA 744 0.375 MSSSNLFTTITISLTLALILQTSFALTSPLSHICSTSENFTSYTPYESNLKTLINSLIYKTPSTGFGIGSAGLTQYQNQQAYGLAICRGDVSTSQCKTCVSEATKEILNLCPFNKGAIIWYDNCMFKYLDNDFFGKIDNSNKFSLLNVQNVDDPIKFNNVTKDLLSLLAYEASMDKKMYANGELKIGELERVYGQAQCTRDLSSVDCKKCLDDAITEIPNCCDGKKGGRVVGGSCNVRYEIYPFVRE 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01997 247 FunFam Cysteine-rich receptor-like protein kinase 25 141 244 - -
Vifa1g01997 247 Gene3D - 139 244 IPR038408 -
Vifa1g01997 247 Gene3D - 27 133 IPR038408 -
Vifa1g01997 247 Pfam Salt stress response/antifungal 151 241 IPR002902 -
Vifa1g01997 247 Pfam Salt stress response/antifungal 34 128 IPR002902 -
Vifa1g01997 247 ProSiteProfiles Gnk2-homologous domain profile. 28 133 IPR002902 -
Vifa1g01997 247 PANTHER CYSTEINE-RICH REPEAT SECRETORY PROTEIN 38-RELATED 10 246 - -
Vifa1g01997 247 ProSiteProfiles Gnk2-homologous domain profile. 139 244 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01997 Vifa-Chr1 319108118 319108861 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01997 4 246 Pollen Coat Proteome AT4G20670 37.165 1.88e-48 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01997 - - gmx:100527155 363.229