Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01795 ATGGCACTGACCAACAACAATATTCTATATAGTTCAATCCATAACACCAAGTTCCAAACTTGTGTTTTTGATGAGACAATAATGGAGATTAACACTGTTATGTCTCATGGTATCAATGAAGAAGAAGAAGATGGTTCACAAAGCAATGAATCAGCTTCTGCTTCTGCTTCTGCTTCTGCCACTACTCATTCTTCTACCAAAAAAGGGTATGTTTATAACAATACAAGTTATGAACTTGAAGAAGAAGAGTCTTTGATTAATTTCAAAGGTAATGATGATAAGTTTTATGAGAATCTCATACAAAGTAGTGAATCTTTGCTTAGTTTTCAGCAGAGCTGGAATATGGCTTCCAATGAGAACAATTTGCAACAATGGAATCATCTTAGTCCTAAAAGCATCACAAACTTGTGCATGGTGCAAGGTTTCAATGGCTTTGAAACTTCTAGTGGAAGCTATGGATCCATATTCAATAGTGCTAAAGAGAAGCAAAATGGTGAAAGTTCATGTGGGTGGCTATACTCAGATCCAAATGTCCCTTGTGATGAGGATGATAGGTTAATAAAAGAGTCGGAAACTCATTATTCCTTCGCGAAGAAGCGTTCTTCAATGGGAGAGAACATGCAACCTGCTAATGCAAAGAAGCCATGCACAACTGCAAGTAAAACGGCGAAACCGAAGTCAAATCCATCCAAAGATCCTCAAAGTGTTGCTGCTAAGAATAGAAGAGAGAGAATAAGTGAGAGGCTCAAGATCCTACAAGAACTTGTTCCCAACGGTTCCAAGGTTGATTTGGTTACTATGTTGGAAAAAGCAATTAGTTATGTGAAGTTTCTTCAGTTGCAAGTCAAGGTGTTGGCAGCTGATGAATTTTGGCCTGTGAATGGTGGAAAAGCTCCTGACATTGGTCAAGTAAAGCAAGCAATTGATGAAATACTTTCATCTCAAAGATGA 951 0.3796 MALTNNNILYSSIHNTKFQTCVFDETIMEINTVMSHGINEEEEDGSQSNESASASASASATTHSSTKKGYVYNNTSYELEEEESLINFKGNDDKFYENLIQSSESLLSFQQSWNMASNENNLQQWNHLSPKSITNLCMVQGFNGFETSSGSYGSIFNSAKEKQNGESSCGWLYSDPNVPCDEDDRLIKESETHYSFAKKRSSMGENMQPANAKKPCTTASKTAKPKSNPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLAADEFWPVNGGKAPDIGQVKQAIDEILSSQR 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01795 316 FunFam Transcription factor bHLH83 227 286 - -
Vifa1g01795 316 Pfam Helix-loop-helix DNA-binding domain 239 279 IPR011598 GO:0046983
Vifa1g01795 316 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 227 287 IPR036638 GO:0046983
Vifa1g01795 316 Gene3D - 224 286 IPR036638 GO:0046983
Vifa1g01795 316 MobiDBLite consensus disorder prediction 199 235 - -
Vifa1g01795 316 MobiDBLite consensus disorder prediction 40 61 - -
Vifa1g01795 316 SMART finulus 235 284 IPR011598 GO:0046983
Vifa1g01795 316 MobiDBLite consensus disorder prediction 198 241 - -
Vifa1g01795 316 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 229 278 IPR011598 GO:0046983
Vifa1g01795 316 CDD bHLH_AtIND_like 230 292 - -
Vifa1g01795 316 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 38 286 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01795 Vifa-Chr1 292258509 292259906 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01795 68 316 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 46.850 5.58e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa1g01795 HLH 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01795 - - gmx:106795957 344.739