Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01473 ATGGATCCTTCTTCTCAGCAAATGGAAAACATGTTGGTATGTTCAAAAGAACAGCAAGAAAACAAACCAAAACCTCAGCCAGAACAAGCTCTGAAATGTCCGAGATGCGATTCAACCAACACCAAATTCTGTTACTACAACAATTACAGTCTCACTCAGCCGAGATATTTCTGCAAATCTTGCAGGAGATATTGGACTAAAGGTGGAACATTGAGGAATGTTCCTGTTGGTGGCGGGTGTAGAAAGAACAAGAGATCATCTTCCTCGAAGAGGGTTCAAGATCAAGCATTTGCGCCTAATCATAACCCGTTTTCAAACGTACCACATTTTGATCAATCTAACGAGTTTGCATTAGCATTGGCTAGGCTTCAGAAACAATCATGTGGTGGACAAGTGGGTTATGATGAAAATGAGCTTTCAATGTTGGGAAACAATGGATCAAGCATGAATCATTCGATGAACATAAATCATGGGTTTATGGATGCAATTAGAAGTGGGTTATTCCTTGGAAATGGAATGCATTATAATAGTAATGTTCAAAATATGTATGGTGGTGGGTATGTACATGGTGACAATGGAGAAGTGAATAGTGGAAACAACAATTGTGGGGTTAGTGAAGAGATGATGTTTAATTATGATCAAGAAATGAGCAATTGCAATGCTGCCATTAACATGAAGCAAGAACAAAGTGAAAGTAGGGTTTTTGGTGGTTTTCCTTGGCAGATGAATGGAGGAATTGCAAACATGGGTGAAGTTGAACAAGCAAGAGCTAGCTGGAATAATGGTTTCGCCACACCTTCTTGGCAAGGGCTTCTTCATAGTCCTCTAATGTAG 834 0.3969 MDPSSQQMENMLVCSKEQQENKPKPQPEQALKCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSKRVQDQAFAPNHNPFSNVPHFDQSNEFALALARLQKQSCGGQVGYDENELSMLGNNGSSMNHSMNINHGFMDAIRSGLFLGNGMHYNSNVQNMYGGGYVHGDNGEVNSGNNNCGVSEEMMFNYDQEMSNCNAAINMKQEQSESRVFGGFPWQMNGGIANMGEVEQARASWNNGFATPSWQGLLHSPLM 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01473 277 Pfam Dof domain, zinc finger 29 85 IPR003851 GO:0003677|GO:0006355
Vifa1g01473 277 MobiDBLite consensus disorder prediction 1 31 - -
Vifa1g01473 277 ProSiteProfiles Zinc finger Dof-type profile. 31 85 IPR003851 GO:0003677|GO:0006355
Vifa1g01473 277 MobiDBLite consensus disorder prediction 1 20 - -
Vifa1g01473 277 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 211 IPR045174 GO:0003700|GO:0006355
Vifa1g01473 277 ProSitePatterns Zinc finger Dof-type signature. 33 69 IPR003851 GO:0003677|GO:0006355
Vifa1g01473 277 MobiDBLite consensus disorder prediction 78 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01473 Vifa-Chr1 241462697 241463666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01473 29 277 C2C2-Dof Transcription Factor Family AT2G28510 40.075 2.38e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vifa1g01473 zf-Dof 1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01473 - - gmx:100799737 295.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01473 1 241462697 241463666 Vifa1g01473 1 241462697 241463666 ECH
Vifa1g01473 1 241462697 241463666 Vifa6g00638 6 242262565 242263690 PCT