Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01083 ATGGATCCAAACTTCGAAACAAGCTTTGAATTCGACGACAATGGTAACTTATTCTTCCTTTCTGATCCAAATCCAACCACTGATTCTTATTTCTATCTACCTCATGTTCCTCCACCTGATTTTCCTCCGAGTTTTTCCAATTCGGAGGAGCCACTCGTTTCAACCACCACTGATTCTTCTTCCATTGAAGACACTGATTTTTCAGAAACTGTAAAATACATAAGCCAGATTCTCATGGAAGAGGATTTTGAACAAAAACCCTGCATGTGTTATGACTCACTTAGTCTCCAACACACTGAGAAAATTTTCTTTGATGCTTTGGATTCAAATTTGCCTCTTTCACCTAATCAACACCCTCTTGATATCATTGAAGTTCCTGATAGGAATTGTTCGGCTACTGATTCTGGTAACAGTTCTAGTTCTAATGAGTTGAAGCCTCTTTCTCCTGATACACCGGTTTCAGGTGATTCTGGTTTTAATTCCGTTTCTTATGTGAATTCTCAATTTGTTGGTTTGAGTAGTGATGGTAGTAATAATATTAGTGATGGTGTTTTGGATTTGGATTCTTCTGAGACAAAGCTTTTGGCTCAGAATATTTTTAGTGATGCTAATTCTATGTTGCAGTTTAGAAAAGGGTTGGAGGAAGCTAGTAAGTTTCTTCCTCAAAAGCCTCAGCTTTTTAGGGGTTTTGAGACTGCTAAGACTAGTTTTGTGTCTCAAGAGGCTAAGGGGAGAGTGGGAGGTATAAAGATGGAGGATAGTGTTAGGGAGAATTCGAATTTGAGGAATTCGAGTTCGTATGTTTTGTTGAAGAGTAGGAAGAATCACGAGCGTCAAGGTAGTGAAGATGAAGATGGGAGAAGTAACAAACAATCTGCGGTTCGTGTTGAGGAAAGTGAAATATCTGAGATGTTTGATAGGGTTTTGCTTAGTGTTGAAAACGTGCCGCTGTGTGCTGAACAAAAGGATGGATCGGAGATGGAGAGTAGCGCACAGGTTGGTGAGCTTGATGGAGGGAGGGCGCATTCGAAGAAACAGGGGAGGAAGAGGGAAGCTGTGGATTTGAGGACCCTTTTGGTTCTCTGTGCACAAGCTGTGTCTGGTAATGATAACCGGACGGCTAATGAATTGTTTAAGCAGATTAGGCAGCATTCTTCTCCTTTGGGTGATGCTTCTCAGAGGTTGGCTCATTACTTTACGAATGCAATTGAAGCACGCATGGTTGGTGCCGGTACTGGTACACAGATATTATATATGAGCCAGAAGATGTTTAGTGCTGCTGATTACTTGAAAGCATACCAAGTTTTTATATCTGTTTTACCTTTTAAAAAATTTGCACATTTCTTTGCAAATAAAATGATACTGAAAACAGCTGAAAAGGCGGAAACACTTCACATTATTGATTTTGGTATCTTATACGGTTTCCAGTGGCCAATTCTTATCAAGTTTCTGTCAGAAAGAGATGGTGGACCTCCCAAGCTTCGCATCACCGGAATAGAGTATCCCCAAGCTGGCTTTCGACCGGCTGAAAGAATCGAGGAAACTGGCCGGCGTTTAGCTAACTATTGTAAGCGTTTCAATGTTTCCTTTGAATACAAGGCCGTACCATCGCGAAACTGGGAAACCATTCAAGTTCAAGACCTTAATATTAAGAGCAATGAGGTAGTTGCTGTGAACTGTCTGATAAGGTTTAAGAATTTACATGATGAGACAATTGAAGTGAACAGTCCTAAAGACGCGGTTCTGAAGTTAATCAGGAAGATAAACCCGAGTATATTTGTTCAATCTATAGTAAATGGATCTTACAATGCTCCTTTCTTTGCCACGCGCTTCAAGGAGTCGCTTTTCCATTATTCTGCAATGTATGATATGTTTGACACTCTCATACCCCGTAAAAATGAATGGAGGCTGACGATTGAGAGAGAGCTTTTGGGTCGGGAGATTATGAATGTTGTAGCATGTGAAGGTTTTGAGAGGGTTGAGAGGCCGGAGTCATACAAACAGTGGCAGGTTAGGAGTCTACGGGCCGGTTTTAGGCAGCTCCCACTTGATAAGGAGATAATGGTCAAATTTAGAGGTAAGCTAAGAGAATGGTACCACAAAGATTTTGTCTTCGATGAAGATAACAACTGGATGCTTCAAGGTTGGAAAGGCCGCATTTTATATGCATCGACCTGTTGGGTGCCTGCATAA 2193 0.4109 MDPNFETSFEFDDNGNLFFLSDPNPTTDSYFYLPHVPPPDFPPSFSNSEEPLVSTTTDSSSIEDTDFSETVKYISQILMEEDFEQKPCMCYDSLSLQHTEKIFFDALDSNLPLSPNQHPLDIIEVPDRNCSATDSGNSSSSNELKPLSPDTPVSGDSGFNSVSYVNSQFVGLSSDGSNNISDGVLDLDSSETKLLAQNIFSDANSMLQFRKGLEEASKFLPQKPQLFRGFETAKTSFVSQEAKGRVGGIKMEDSVRENSNLRNSSSYVLLKSRKNHERQGSEDEDGRSNKQSAVRVEESEISEMFDRVLLSVENVPLCAEQKDGSEMESSAQVGELDGGRAHSKKQGRKREAVDLRTLLVLCAQAVSGNDNRTANELFKQIRQHSSPLGDASQRLAHYFTNAIEARMVGAGTGTQILYMSQKMFSAADYLKAYQVFISVLPFKKFAHFFANKMILKTAEKAETLHIIDFGILYGFQWPILIKFLSERDGGPPKLRITGIEYPQAGFRPAERIEETGRRLANYCKRFNVSFEYKAVPSRNWETIQVQDLNIKSNEVVAVNCLIRFKNLHDETIEVNSPKDAVLKLIRKINPSIFVQSIVNGSYNAPFFATRFKESLFHYSAMYDMFDTLIPRKNEWRLTIERELLGREIMNVVACEGFERVERPESYKQWQVRSLRAGFRQLPLDKEIMVKFRGKLREWYHKDFVFDEDNNWMLQGWKGRILYASTCWVPA 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01083 730 MobiDBLite consensus disorder prediction 266 297 - -
Vifa1g01083 730 MobiDBLite consensus disorder prediction 130 155 - -
Vifa1g01083 730 MobiDBLite consensus disorder prediction 320 348 - -
Vifa1g01083 730 MobiDBLite consensus disorder prediction 127 155 - -
Vifa1g01083 730 ProSiteProfiles GRAS family profile. 346 728 IPR005202 -
Vifa1g01083 730 Pfam GRAS domain family 355 727 IPR005202 -
Vifa1g01083 730 MobiDBLite consensus disorder prediction 271 297 - -
Vifa1g01083 730 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 289 723 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01083 Vifa-Chr1 177368598 177370790 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01083 70 730 GRAS Transcription Factor Family AT1G07530 49.639 0.0 630
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa1g01083 GRAS 1.1e-114 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01083 1 177368598 177370790 Vifa1g01083 1 177368598 177370790 ECH
Vifa1g01083 1 177368598 177370790 Vifa6g00759 6 269919491 269921620 PCT