Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00523 ATGAATCAAAACTATCTTGAACCTCTCCCATTGCTAAGTAGCTTCTTAGATTCAACTCCTCAACAATCTTCACAGCAAAACATGACTCATGCATCATGTTTGAATCAAACTGTAGATCTCACAGTGGCCTTACATATTGGTCTCCCTTCAATTGAAACACCAACTGATATTGTTCCCAATTCCGCTCCAAACAATTACTGGATACCAAGTGAAGAACATATTCGCATCGGTTTCAGTCATTTCTCATGCTCCGTTTGTCACAAAACTTTTAACCGTTACAACAACCTTCAGATGCATATGTGGGGTCACGGCTCGCAGTATCGAAGAGGACCGGGCTCGCTGAAAAGAACTCATCCGCGACCGCTGTTGGACATTCCATGCTATTGTTGTTCAAAGGGATGTAAGAACAACATTGAGCATCCAAGAGCTAAGCCATTGAAAGATTTCAGAACATTGCAGACACATTACAAAAGGAAGCACGGCTCGAAAAGCTTTACATGTAGAAAATGTGGGAAATGTTTGGCAGTGAAAGGTGATTGGAGAACTCATGAGAAAAATTGTGGTAAGCGTTGGCTTTGTATTTGTGGTTCAGATTTCAAACACAAGAGGTCATTGAAAGATCATGTCAAAGCTTTTGGATTTGGTCATGCTCCTTTTTCTTCTTCCTCTCATGGAATATGA 681 0.4082 MNQNYLEPLPLLSSFLDSTPQQSSQQNMTHASCLNQTVDLTVALHIGLPSIETPTDIVPNSAPNNYWIPSEEHIRIGFSHFSCSVCHKTFNRYNNLQMHMWGHGSQYRRGPGSLKRTHPRPLLDIPCYCCSKGCKNNIEHPRAKPLKDFRTLQTHYKRKHGSKSFTCRKCGKCLAVKGDWRTHEKNCGKRWLCICGSDFKHKRSLKDHVKAFGFGHAPFSSSSHGI 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00523 226 SMART c2h2final6 81 103 IPR013087 -
Vifa1g00523 226 SMART c2h2final6 165 185 IPR013087 -
Vifa1g00523 226 SMART c2h2final6 128 160 IPR013087 -
Vifa1g00523 226 PANTHER ZINC FINGER PROTEIN WIP2 19 220 IPR043584 GO:0003700|GO:0010468
Vifa1g00523 226 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
Vifa1g00523 226 SUPERFAMILY beta-beta-alpha zinc fingers 73 103 IPR036236 -
Vifa1g00523 226 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Vifa1g00523 226 Gene3D Classic Zinc Finger 78 104 - -
Vifa1g00523 226 FunFam Zinc finger protein WIP2 134 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00523 Vifa-Chr1 88366899 88367661 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00523 1 222 C2H2 Transcription Factor Family AT1G34790 56.400 1.42e-98 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa1g00523 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00523 1 88366899 88367661 Vifa1g00523 1 88366899 88367661 ECH