Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00378 ATGGGAAGAGGAAGAGTTGAGTTGAAGAGGATAGAAAACAAGATAAACAGACAAGTAACATTTGCAAAAAGAAGAAATGGTCTTCTTAAAAAAGCCTATGAACTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTACTCGTGGAAAACTCTATGAGTTTTGCAGCACTTCTAACATGCTCAAAACTCTTGATAGGTACCAGAAGTGTAGTTATGGTGCTGTTGAAGTTAGCAAACCTGCCAAAGAACTCGAGCAGAGTAGCTACCGGGAATACTTGAAGCTGAAACAACGATTTGAGAATCTTCAAAGAACACAAAGAAATCTTTTAGGGGAAGATTTAGGGCCATTGAGTTCTAAAGATCTTGAGCAGCTTGAAAGGCAATTGGATTCATCTCTGAAGCATGTTAGGTCAACAAAGACACAATTCATGTTGGACCAATTAGCTGATCTTCAAAATAAGGAACATATGTTGGTAGAAGCAAACAGATCCTTGTCAATGAAGTTGGACGAAATAAATTCGAGAAATCAGTACAGACAATCATGGGAAGCAGGCGATCAAAGCATGCAATACGCCGATCAACAGAATGCTGCTCACTCTCAAAGCTTCTTCCAGCAACTAGATTGCAATCCAACATTACAAATCGGTTCTGATTATAGGTACAACAATGTAGCATCAGATCAGATAGCTTCAACAAGTCAAGCTCAACAACAAGTGAATGGATTTGTTCCTGGATGGATGCTTTGA 756 0.3902 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSTSNMLKTLDRYQKCSYGAVEVSKPAKELEQSSYREYLKLKQRFENLQRTQRNLLGEDLGPLSSKDLEQLERQLDSSLKHVRSTKTQFMLDQLADLQNKEHMLVEANRSLSMKLDEINSRNQYRQSWEAGDQSMQYADQQNAAHSQSFFQQLDCNPTLQIGSDYRYNNVASDQIASTSQAQQQVNGFVPGWML 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00378 251 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Vifa1g00378 251 Coils Coil 125 145 - -
Vifa1g00378 251 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Vifa1g00378 251 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Vifa1g00378 251 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vifa1g00378 251 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa1g00378 251 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifa1g00378 251 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa1g00378 251 Coils Coil 95 115 - -
Vifa1g00378 251 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa1g00378 251 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa1g00378 251 Pfam K-box region 88 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa1g00378 251 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 192 - -
Vifa1g00378 251 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vifa1g00378 251 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vifa1g00378 251 FunFam MADS-box transcription factor 1 13 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00378 Vifa-Chr1 61007259 61010322 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vifa1g00378 K-box 4.8e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00378 1 61007259 61010322 Vifa1g00378 1 61007259 61010322 ECH
Vifa1g00378 1 61007259 61010322 Vifa4g03453 4 1081458269 1081470443 ECH
Vifa1g00378 1 61007259 61010322 Vifa1g00378 1 61007259 61010322 PCT