Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01272 ATGACTTTGCAAAGCAGTAGAGGCTACCACGAGTGCACGACCCGCCATAGCTTGGCAATCATTCTAAGTCCGGACAAGTCAAGTTTAAGTGCAACAAGTCGTCTCACCCTTGCTTTTGTGTTTGTGTTTTGCTTGGGTATGCTTTTCTTTTGCAATGATCATCTACTTGGATGTGAGCAGAGACGTATGAGGTGCCCGCGATGCGATTCATCCAACACCAAGTTCTGCTACTGCAACAACTACAACCTCACTCAGCCCCTCCACTTTTGCAAGACGTGCCGCCGCTACTGGACCAAAGGTGGCGCTCTTTGCAACGTTCCCATCGGCGGCGGCTGCCGGAAAAACAAAAATATCGGCGTGGCGAACTCAGCCGTTGCATCTGAGAGCGGATCTGGAGCGGATCTGGAGCGGATCTGTAGTGGATCTGGAGCAGATCTGGACGAAGCTGGCGGTGAGGGTTGGACGAAGCTGGCGGTGGATCTGGACGAAGCAGATCTGGAGCGAATCTGTAGTGGATCGACGACGAGGCAGTGGTTGACCACGCGACGTCGAGGCATCAACGGGGAGGCCGCGGCGGTGAGGGAGCAGTAG 591 0.5465 MTLQSSRGYHECTTRHSLAIILSPDKSSLSATSRLTLAFVFVFCLGMLFFCNDHLLGCEQRRMRCPRCDSSNTKFCYCNNYNLTQPLHFCKTCRRYWTKGGALCNVPIGGGCRKNKNIGVANSAVASESGSGADLERICSGSGADLDEAGGEGWTKLAVDLDEADLERICSGSTTRQWLTTRRRGINGEAAAVREQ 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01272 196 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 60 129 IPR045174 GO:0003700|GO:0006355
Vian9g01272 196 ProSiteProfiles Zinc finger Dof-type profile. 63 117 IPR003851 GO:0003677|GO:0006355
Vian9g01272 196 Pfam Dof domain, zinc finger 62 117 IPR003851 GO:0003677|GO:0006355
Vian9g01272 196 ProSitePatterns Zinc finger Dof-type signature. 65 101 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01272 Vian-Chr9 26961663 26963257 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01272 59 147 C2C2-Dof Transcription Factor Family AT1G51700 53.465 6.28e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vian9g01272 zf-Dof 3.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01272 - - var:108339373 161.77