Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00513 ATGGAGGGGATGGCTCCAAATTCATGTGCAAGGCCAGGTTTAGAGAAGAAAGCAAGACCACAAGAGCAACTGAATTGTCCAAGGTGCAATTCAACTAACACAAAGTTCTGTTATTACAACAACTACAGCCTCACACAGCCAAGATACTTCTGTAAGACTTGTAGAAGGTATTGGACAGAAGGAGGGTCTCTGAGAAACGTTCCGGTTGGAGGTGGTTCAAGAAAGAACAAGAAGGTCACTTCAGGAGGAGCAGGAGCCTCAGCTTCATCATCTTCATCGTCATCATCAAAGATTCCTGACCTAAATCCCCCAAACCTCTCAGCTCTCTCTTCACAAAACCCTAAAATATTACATGGTGGCCAGGATCTCAACCTGGCTTTCCCAGCCATGGACAAGTATCATCATCATCATGGCATCTCCCCTTATGTCGAGATGCAAAACAGTGACAGCACCACTCATCATCACCAAAACTCTCCTTCTTGTTCTGCTGCTCCAACCTCTCTTTCGGCTCTTGAGCTGCTAAGGTCCAGCATGGCATCTAGGGGTTTGAACCCTTATGCTCCTTCTTCCTTGATGCCAAACTCAGCAAACAACAATGCCCTTTACCCATCAGGGTTTCCCATGCAAGAAGTCAAACCAAGCCTCAGCTTTTCCTCAGTTGATGGGATGGGAAATAGATCATACGATCATCAGGTCCAAGAGAGGGGTGGCAGAGTTTTGTTCCCTTTTGGAGATGTCAATAAGCAGCTTTCTGCTGCAGGATCAGCTGAAGTGGAACACGGTAAAGAACAACAGCAACAGCATCAACAAGGAAACTCAACTGGATATTGGACTGGAATGATTGGTGAAGGGACATGGTAA 861 0.4611 MEGMAPNSCARPGLEKKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKVTSGGAGASASSSSSSSSKIPDLNPPNLSALSSQNPKILHGGQDLNLAFPAMDKYHHHHGISPYVEMQNSDSTTHHHQNSPSCSAAPTSLSALELLRSSMASRGLNPYAPSSLMPNSANNNALYPSGFPMQEVKPSLSFSSVDGMGNRSYDHQVQERGGRVLFPFGDVNKQLSAAGSAEVEHGKEQQQQHQQGNSTGYWTGMIGEGTW 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00513 286 ProSitePatterns Zinc finger Dof-type signature. 26 62 IPR003851 GO:0003677|GO:0006355
Vian9g00513 286 MobiDBLite consensus disorder prediction 65 115 - -
Vian9g00513 286 MobiDBLite consensus disorder prediction 265 280 - -
Vian9g00513 286 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 189 IPR045174 GO:0003700|GO:0006355
Vian9g00513 286 MobiDBLite consensus disorder prediction 252 286 - -
Vian9g00513 286 ProSiteProfiles Zinc finger Dof-type profile. 24 78 IPR003851 GO:0003677|GO:0006355
Vian9g00513 286 MobiDBLite consensus disorder prediction 1 25 - -
Vian9g00513 286 MobiDBLite consensus disorder prediction 80 115 - -
Vian9g00513 286 MobiDBLite consensus disorder prediction 143 164 - -
Vian9g00513 286 Pfam Dof domain, zinc finger 22 78 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00513 Vian-Chr9 5579871 5580731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00513 16 286 C2C2-Dof Transcription Factor Family AT3G61850 48.973 8.33e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vian9g00513 zf-Dof 3.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00513 - - gmx:778110 460.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00513 9 5579871 5580731 Vian9g00513 9 5579871 5580731 ECH
Vian6g01076 6 28160472 28161233 Vian9g00513 9 5579871 5580731 PCT