Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01438 ATGGATCCTCCACCTCTCTCTGCCGCAACCATCATCACTACCACCACTCTTAAAAATCATCCTGATTCGATAGAGTCTTCTTCTCCACGTTCCCGCAATGCAGAAACATGGAGTGATGAGAATTTACCGGCCGTTCCTGGGGCCAAGCTGCGCCTTATGTGCAGCTATGGCGGCCACATCATGCCACGCCCCCATGACAAGACTCTCTGCTATGTTGGCGGTGACACGAGGATTGTCGTGGTGGACCGCCACTCTTCGTTGAAAGATCTGTGTGCACGGCTTTCCCGAACCATTCTCCATGGAAGACCCTTCACACTCAAGTACCAGCTTCCCAATGAAGACCTTGATAACCTCATCACTGTCACCACTGATGAAGATCTTGACAACATGGTGGAAGAGTATGATCGAATTACGGCGAAAGGCACGGCTTCTTCACGGCTCAGGGTGTTCCTGTTCTTCACCAAACCTGAGGCCTCAGTTTCAATGGGGTCACTACTTGATGATGTGAAGTCAGAGACATGGTTTGTTGATGCACTCAACAACTCTGGAATGTTAAACAGAGTAGTTTCTGATTCTGCTGCAGGGGATTCTTTTGTGAACCTTGATGTTGGTGGTGGTGGTGTTAGTGCTAGTGGCTCAAGCAACAACTTAGAGGCTTTGCCTGATACTAACAATAACAAGGCCAAAATCTTGCCTGATGTGGTGCAATCAAGTCCTGGTTCACCTATGATGGAGAACAGCTCCTCTTCTTCTCCTTCTTTCTCTCCTTCTTTGGCAAATCTGCCTCCCATTCGGGTACGTGTCGATGATAACAGTAGTAGGCTTCAACAAGAGAACAAGGTTGCGGGGCTGGCGGAGGAGCAGTTGGTTCAGATGACAATTGCAAGCGGGGTGAAGCAAGATGATGGGTTGGTGAGTGTGGTTTCTTCTGCAGTGGCTGCTGCACCTGCAATTCCTGCAGCTGTGACTATGCCATCTGTTGGGGTGGTTACTGCCAGTGATAATGTGATGAACAGAGTTGTTTCTGAGGACGAGAGATCTGATCTCGGATTTCGGAAGCCCCCTTTACCATTGCAGCTTGTGCAGCCAAGGACTAGTGGTGGTTTGAATTTGCCTTCTCCTGATTCAGTTGCAAGTGATAGCAGTATTGCATCTGCAAATTCTTTCTCCAAGACTGTTTACTATCAAGACCAAGTCCAAGCTGCACAACTAGACAACAAACTGGTTGCTTTACCAAATGGCAAGAGTGAAATATCTGATCAGGTGATTCAGGTCCATGGACAACAAGTTCATGATTCTGGCTACACATTACCCCCACAATTAGATCAAAATAGGCAACTTCAGCAGCAAAAGCCCTTAGTCCATGCCAGCTCTCACTACATCCACCACCCTGCAGCCACAGGGCAAATACCAGTTTCATCATACTACCAAGTTTATGCCCCACCACCACAACAACAACAACTTCACCCTCCAATTGGTCAGCAACAGTACCCAGTTTATGTGATGCCTGTTGGACCCACACAAGTAACACAACCATACAACATGGCCTTGCAGCCCAACATGGGTGACCCAAATGTGTTAATCTCAGGCAGAACCCTAATGCCACAAAGTGCTGTTACCTCAGCAGCATACAAGGATGGTACTCCACCTATCTATCCCACCAAATCAGTTAGCCCTACTATACCTGAGGTGGCTCCAAGTGTTTACAAGGCTCCTCCTCCTGTGGCCTCAAACCCTGCATATGCTCCAATACCTCCCAACCAATTTCAGCCACAGTATGTGGGGTTGTCTCAGTTCCATCATCCACCACAGTCCATTGTTGTGGCTTCCTCTAGTACTACTACTAATTATGGTTATGAATATGGTGGCCATGTGCAAGACCAAGCATACTACACCCAACAACAAACCACTACTGCTCCATTGCTTCCTCAGTACCAATCCATGACCCCAGCTGCAGCAGCTGCAGCACTGAAAGATGCTTCAAAACAGTTTCCTGCAGACACCATTCAGCAGCAAAATAGAGCATCACAGCCAGTATGA 2040 0.4794 MDPPPLSAATIITTTTLKNHPDSIESSSPRSRNAETWSDENLPAVPGAKLRLMCSYGGHIMPRPHDKTLCYVGGDTRIVVVDRHSSLKDLCARLSRTILHGRPFTLKYQLPNEDLDNLITVTTDEDLDNMVEEYDRITAKGTASSRLRVFLFFTKPEASVSMGSLLDDVKSETWFVDALNNSGMLNRVVSDSAAGDSFVNLDVGGGGVSASGSSNNLEALPDTNNNKAKILPDVVQSSPGSPMMENSSSSSPSFSPSLANLPPIRVRVDDNSSRLQQENKVAGLAEEQLVQMTIASGVKQDDGLVSVVSSAVAAAPAIPAAVTMPSVGVVTASDNVMNRVVSEDERSDLGFRKPPLPLQLVQPRTSGGLNLPSPDSVASDSSIASANSFSKTVYYQDQVQAAQLDNKLVALPNGKSEISDQVIQVHGQQVHDSGYTLPPQLDQNRQLQQQKPLVHASSHYIHHPAATGQIPVSSYYQVYAPPPQQQQLHPPIGQQQYPVYVMPVGPTQVTQPYNMALQPNMGDPNVLISGRTLMPQSAVTSAAYKDGTPPIYPTKSVSPTIPEVAPSVYKAPPPVASNPAYAPIPPNQFQPQYVGLSQFHHPPQSIVVASSSTTTNYGYEYGGHVQDQAYYTQQQTTTAPLLPQYQSMTPAAAAAALKDASKQFPADTIQQQNRASQPV 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01438 679 PANTHER OS05G0427100 PROTEIN-RELATED 21 507 - -
Vian8g01438 679 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 69 154 - -
Vian8g01438 679 Pfam PB1 domain 66 152 IPR000270 GO:0005515
Vian8g01438 679 MobiDBLite consensus disorder prediction 664 679 - -
Vian8g01438 679 MobiDBLite consensus disorder prediction 235 258 - -
Vian8g01438 679 ProSiteProfiles PB1 domain profile. 49 152 IPR000270 GO:0005515
Vian8g01438 679 MobiDBLite consensus disorder prediction 19 38 - -
Vian8g01438 679 SUPERFAMILY CAD & PB1 domains 65 162 - -
Vian8g01438 679 Gene3D - 67 153 - -
Vian8g01438 679 MobiDBLite consensus disorder prediction 19 40 - -
Vian8g01438 679 CDD PB1_UP2 53 152 - -
Vian8g01438 679 MobiDBLite consensus disorder prediction 659 679 - -
Vian8g01438 679 SMART PB1_new 64 154 IPR000270 GO:0005515
Vian8g01438 679 MobiDBLite consensus disorder prediction 239 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01438 Vian-Chr8 33750353 33752577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01438 48 203 MAP Kinase Kinase Kinase AT1G16270 39.130 2.66e-27 116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00300 3 2845864 2848232 Vian8g01438 8 33750353 33752577 ECH
Vian8g01438 8 33750353 33752577 Vian8g01438 8 33750353 33752577 ECH