Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00530 ATGCCCTGTACTGAAAACTCTGAGCAACTAGAGAATTATTCTGATTCAACGGATAGCAAACAAGAGACTCTGTATAATCGGCAGGAAAATGAGTCAAAAGTAAATTCCAAAACAGTGGAAAATAATACAGAGAGTAGCAGTACAGATCAAGATAAAATCTTCAAGAAACCAGACAAAATTCTGCATTGTCCTCGATGCAACAGTTTAGACACCAAATTCTGTTATTTCAATAACTACAATGTGAACCAACCTCGGTATTTCTGCAAGAACTGCCAAAGGTATTGGACTGCAGGTGGAACCATGAGAAATGTTCCAGTGGGTGCGGGGAGACGAAAGAACAAGCACCTAGCTTCTCAATACCGGCACATTATTGTATCTTGTGACGGAATTCCAACTACAAGTGACTCTTCTTGTCACCAACTTGCCACAACACTTCAATCTGCTGCTGTTTTCAGGTCTTCAACAGATAATGGTACTGTGTTGAAATTTTGTCCGGATGCCCCTCCTCTTTATGAATCCATGGAGTCAATGCTTAATCTTAAAGAACAAAATCGAAGTGCTGATGAAAATACTGTCAATTATGCAGAAAAAGGGGAGGAGGAAGTATCCTTATGTGGATCATCATCTATGACCAATGCTTACACTCCAAGAAACAAATCAACTGAACCAACTGCATCAAAACCTATGCAGTGTTATCCTGTTCCTCCGTGGATATTCCCTTGGAATCCAGATTGGAACAATGTTGCTTCCACTGCATCACTTCACCCCTCTTCACTACAAATGTGTAACCCTTATAACAGTGCCGACCCTGCTTCAATGCAGTGGTGTCCTACACCGATCATGGCAGTTCCAACAATCTGCCCACCAAGCTTTCCCTTGCAATTTGTTCCTGGATCATACTGGAGTGGACCACCTGTGTATGGTGGTGGAACAGGAGCTGCTTCAATGGGTTTCAATGCCTGCCTTTCACCTACTTCCTCTACCAGTAATAGCTGCTGCTCAGGCAACGGCTCCCCAACACTTGGCAAACACACAAGAGACAATCTTTCAACAGATGAAGAAAAATCAGACATGTGTATCTTGGTTCCAACGACCCTTAGAATTGATGATCCAAATGGGGCCTCAAAATTGGCCTCATCAGGAACCAACCCTGAATGTGTACCAGAAGGTACTATTTCAAAAAGGGCAAAGCCTAGAGAAGGCAAAGACCGTGTCTTGGGTGTGTCTCAAATCTTGGAAGCTAACCCTGCAGCTATTTCTCGTGCTCATGCATTTCAAGAGGGCATGTGA 1290 0.4318 MPCTENSEQLENYSDSTDSKQETLYNRQENESKVNSKTVENNTESSSTDQDKIFKKPDKILHCPRCNSLDTKFCYFNNYNVNQPRYFCKNCQRYWTAGGTMRNVPVGAGRRKNKHLASQYRHIIVSCDGIPTTSDSSCHQLATTLQSAAVFRSSTDNGTVLKFCPDAPPLYESMESMLNLKEQNRSADENTVNYAEKGEEEVSLCGSSSMTNAYTPRNKSTEPTASKPMQCYPVPPWIFPWNPDWNNVASTASLHPSSLQMCNPYNSADPASMQWCPTPIMAVPTICPPSFPLQFVPGSYWSGPPVYGGGTGAASMGFNACLSPTSSTSNSCCSGNGSPTLGKHTRDNLSTDEEKSDMCILVPTTLRIDDPNGASKLASSGTNPECVPEGTISKRAKPREGKDRVLGVSQILEANPAAISRAHAFQEGM 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00530 429 MobiDBLite consensus disorder prediction 371 391 - -
Vian8g00530 429 MobiDBLite consensus disorder prediction 1 21 - -
Vian8g00530 429 MobiDBLite consensus disorder prediction 332 355 - -
Vian8g00530 429 ProSiteProfiles Zinc finger Dof-type profile. 61 115 IPR003851 GO:0003677|GO:0006355
Vian8g00530 429 ProSitePatterns Zinc finger Dof-type signature. 63 99 IPR003851 GO:0003677|GO:0006355
Vian8g00530 429 PANTHER CYCLIC DOF FACTOR 2 6 428 IPR045174 GO:0003700|GO:0006355
Vian8g00530 429 MobiDBLite consensus disorder prediction 1 51 - -
Vian8g00530 429 Pfam Dof domain, zinc finger 58 115 IPR003851 GO:0003677|GO:0006355
Vian8g00530 429 MobiDBLite consensus disorder prediction 28 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00530 Vian-Chr8 9042715 9044004 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00530 8 427 C2C2-Dof Transcription Factor Family AT5G39660 34.305 3.81e-54 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vian8g00530 zf-Dof 4.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00530 - - ccaj:109792807 667.922