Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00321 ATGTCTCTTCTCAGCCGATTCTTCTACAAGCGTCCCCCTGATGGCTTACTCGAATTTGCAGACAGAGTCTATGTATTCGATTCCTGCTTCTCCACCGAAGCCCTCCCAGAGGGAATGTACCAGCTCTACCTCCGCCAAATTCTCTCCGACCTCCACGAAGACTTCCCGGAATCTTCCTTCCTCGCACTCAACTTCCGCGACGGTGACTCACGCAGCCGCTTCTCGCGCCTCCTGTGCGGACTTGACGCCATCGTCATCGACTATCCGAAGCAGTACGAGGGCTGCCCCCTCCTCCCCCTCTCCCTCCTCCACCACTTCCTCCGCCTCTGTGACACCTGCCTCGCCGACCCCGCCGCCGTGATCTTGTTCCACTGTGAGCGCGGCGGCTGGCCCCTCCTCGCCTTTCTCCTTGCTGCTTTCCTCGTTTTCCGGAAGGCGCAGAGTGGGGAGCGGAAGATTCTGGAGATGGTTCACAGGGAGGCGCCGAAGGGGCTGCTGCAGCTGCTGTCGGCGCTCAACCCGATGCCGTCGCAGCTGCGTTATGTGCAGTATGTGGCTCGGAGGAACATTGGCGCGGAGTGGCCGCCGCCGGAGAGGGCGCTGTCTCTCGACTGTGTAATACTCAGAGGGGTTCCTGGGTTTGATGGGGGGAATGGGTGCAGGCCGTTGTTTAGGATTTTTGGGAGGAATTTGCTTAGTAAAGGCGGCCTTTCCACGCGGATGATTTATAATATGCATAAGAAGAAGAAGACTTTGAGGCACTACAGACAGGCAGACTGTGATGTGATTAAGATTGATATTCAATGCTTAGTGCAAGGGGATGTGGTGTTGGAGTGCGTGCATTTGGATTTGGATCCGGAGAGGGAGGTGATGATGTTTCGAGTGATGTTCAATACAGCATTCATTCGGTCGAACATTTTGATGCTGAATGCTGAGAACTTGGACATTCTGTGGGATTCGAAGGAGCGGTATCCAAAGGGCTTCCGGGCTGAGGTATTGTTTGGGGAGGTTGAAAACATAAGTCCTCAAAGGGCTCCCACAAGTATTTTAGATGGTGAGGTGAAAGGTGGATCACCCATTGAGGCATTTTCAAGGGTTCAAGAACTTTTCAGTGGTGCAGAATGGATTGACAGTGGTGATTCTGCTGCTGTATGGCTTCTTAAGCAGCTTACAGTATTAAACGACGCCAAAGAGTTTTCAAGGTTTCAGGGTAGAGGAAGTTGGTATTCATCTCCTGCTGACTCTGAAGAAGAAAATAATGAGTCGAGCACTGCTGATAGTTCAGACGAGGCCTTTGATGTTATTCCCAGGTCTTATGCTGATCCTTCAAAATTATTTACATCTGACACACCTGATTTGGTCCATTTAACTTTTGAAAACAACGGTGGAGATTATGTAAATCTAACTTCAAGAACACCTGATCAGTCACTAACCGATGATGTTTCATTGCCTCACCATGCTCTAACAAAGGAAACTTCTCCTTGTTTGTCTCCACCGTCACCTTCACATTTTCCCGCTATTCAACCTCTACCGACACTTCCACCTCAATCATCAATACCTATACAGCCAAGTTTAGCTCCTCCCCATCCTCCCCCACCTCCGCATCCATTAGTTCAGGATCTGAACAATGCTTCTACATTGCCTTCACCTCCTCCTCCACCCCCTCTCCCTCCTATAGGTGGGGATGCCAATAGCACTCCTGGTTTACCTCCATCTGTACAAACAAGTTCAGCCCCTCCACCACCTCCTCCTCCCCCACTTGCACTTGGACCCGTACAAACAACTTTAGTCCCACCACCTCCTCCTCTTCCACCACCAGGTACTGAGGGAACAAATTCAGTCCCACCACCTCCGCCTCCATCTCCACCTTCAGGTCCTTTGCGAACAGATTTGGCCCCTCCACCTCCACCACCTCCTCCTCCTCCTCCTTTAGGTCCTATGCAAACAGGTTCAGCCCCACCACCACCACCACCACCTCCACCTCCTCTAGGTCCTGCACAAACAAGTTCAGTTCCACCTCCACCTCCTTCAGGTCCTACACAATTAGGTTCTTTACCCCCACCACCTCCAGGTCTTGTACAAACAGGTTCTGCTCCACCTCCACCTCCACCTCCTCCTCCTCCAGGTCATGTGCAAACAGGTTTAGCTCCACCTCCACCTCCACCTCCTCCAGGTCCTGTACGAACAGCTCCACCACCAGCTCCACCTCCACCAGGTGCTGTACAAACAGGTTCAGCCCCACCACCACCACCTCCTCCTCCAGGTCCTGTACGAGCAGGTGCAGGTCCACCACCACCTCCACCTCCTCCAGGTCCTGTACGAACAGGTTCAGCTCCTCCACCACCTCCTCCTCCAGGTCCTATACGAGCAGGTTCAGCTCCCTCACCACCACCTCCGCCAAGTGTACAAACAGGTTCAGCTCCACCACCACCACCACCACCATTGGCACCAAGGCCCCCAGGTGCTCCTCCTCCTCCTCCACCTGGTCGTGGTGCATCTCCAATGCCACCTGCACTTACAGCCACTAGTGTGGCACCACCTCCTGGCAAAGCTTCAACAACAAATGTTGGTAGAGGTCGTGGTACTGGTGTTACTGCTAATGCTCCAAAGAAAACTTTGCTAAAACCCCTACACTGGGTGAAAGTTGCTCGAGCAGCCAAGGGAAGTCTATGGGCTGATTCATAG 2685 0.5296 MSLLSRFFYKRPPDGLLEFADRVYVFDSCFSTEALPEGMYQLYLRQILSDLHEDFPESSFLALNFRDGDSRSRFSRLLCGLDAIVIDYPKQYEGCPLLPLSLLHHFLRLCDTCLADPAAVILFHCERGGWPLLAFLLAAFLVFRKAQSGERKILEMVHREAPKGLLQLLSALNPMPSQLRYVQYVARRNIGAEWPPPERALSLDCVILRGVPGFDGGNGCRPLFRIFGRNLLSKGGLSTRMIYNMHKKKKTLRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFNTAFIRSNILMLNAENLDILWDSKERYPKGFRAEVLFGEVENISPQRAPTSILDGEVKGGSPIEAFSRVQELFSGAEWIDSGDSAAVWLLKQLTVLNDAKEFSRFQGRGSWYSSPADSEEENNESSTADSSDEAFDVIPRSYADPSKLFTSDTPDLVHLTFENNGGDYVNLTSRTPDQSLTDDVSLPHHALTKETSPCLSPPSPSHFPAIQPLPTLPPQSSIPIQPSLAPPHPPPPPHPLVQDLNNASTLPSPPPPPPLPPIGGDANSTPGLPPSVQTSSAPPPPPPPPLALGPVQTTLVPPPPPLPPPGTEGTNSVPPPPPPSPPSGPLRTDLAPPPPPPPPPPPLGPMQTGSAPPPPPPPPPPLGPAQTSSVPPPPPSGPTQLGSLPPPPPGLVQTGSAPPPPPPPPPPGHVQTGLAPPPPPPPPGPVRTAPPPAPPPPGAVQTGSAPPPPPPPPGPVRAGAGPPPPPPPPGPVRTGSAPPPPPPPGPIRAGSAPSPPPPPSVQTGSAPPPPPPPLAPRPPGAPPPPPPGRGASPMPPALTATSVAPPPGKASTTNVGRGRGTGVTANAPKKTLLKPLHWVKVARAAKGSLWADS 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00321 894 MobiDBLite consensus disorder prediction 546 561 - -
Vian8g00321 894 ProSiteProfiles C2 tensin-type domain profile. 198 337 IPR014020 -
Vian8g00321 894 Pfam C2 domain of PTEN tumour-suppressor protein 197 335 IPR014020 -
Vian8g00321 894 MobiDBLite consensus disorder prediction 573 834 - -
Vian8g00321 894 MobiDBLite consensus disorder prediction 498 538 - -
Vian8g00321 894 PANTHER FORMIN-J 1 773 - -
Vian8g00321 894 MobiDBLite consensus disorder prediction 460 872 - -
Vian8g00321 894 MobiDBLite consensus disorder prediction 462 479 - -
Vian8g00321 894 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 198 337 IPR035892 -
Vian8g00321 894 Gene3D - 195 340 - -
Vian8g00321 894 SMART PTEN_C2_2 196 336 IPR014020 -
Vian8g00321 894 Gene3D Protein tyrosine phosphatase superfamily 15 189 IPR029021 -
Vian8g00321 894 MobiDBLite consensus disorder prediction 846 861 - -
Vian8g00321 894 MobiDBLite consensus disorder prediction 407 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00321 Vian-Chr8 5355972 5359260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00321 755 894 FH2 protein (formin) Gene Family AT1G31810 45.946 1.38e-08 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00321 - - var:108334847 1186.02