Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00948 ATGGCGGATCAGTTCTCCAATGAAGGCTCCAGTACTGGAAATATTTCAGCAGAGTGTTCAGATTCAACTGTTCAGCTCAATATCAAAACTCTAGATTCCCGCATCTACAGTTTTCAAGTGAACAAAAATATGCCTGTTTCATTGTTCAAAGAGAAAATTGCAAATGAAATTGGTGTTCCAGTTAGTCAGCAACGATTGATATTTAGAGGAAAAGTCTTAAAGGATGAGCATGTTCTTTCTGAGTATCATGTTGAGAATGGGCATACATTGCATTTAGTTGAAAGACAACCAAATCAGCCACAGGCTTCTGGTACGAGTGCTGATGAGCACACTGGTACAAGTAGTAACCAAGGTTTAAATTCAGGAAATGATGTGGGATCAGGGCCTCCTCGTAACCGTCTTGGGCAAATTTCACACAGTGTTGTTCTTGGGACATTTAACGTGGGGGAACAGGGTGAAGGAATTGTTCATGACATCACTCGGGTTATTGGGCATGTTTTAAATTCTATTGGAAACGGCGGCCAAAGTACAGTAAATGGTCCTAATGCTGTGCAAACTTCTGCTCAACCAGGCAATGAAACTGAAGGAATTCGTGCTGGAAATCAAAACCCAGCAGGAAACCAGGCACCATCTGGACAGACATTTCATGGTCCAACATTTCAATCTGTATCTCATGTTCAGATTCCTGTGGCAGCAGGATCCATACCCCTCCCATCTCTCAATGCACCAATTCCTGATTCATTGAACACACTGATTGAGTTTATGAATCGCATGGAACAGACACTGACACAAAATGGTTATCAGTCAAATTTTTCGTCAGCTAACCCTGGAGATCAGAGAGTGGAATTGCCTTCTAATACGCAAGGGATGCCGACTCTTGAAGCATTAAGTACTGTCTTGCGTCGTGCAGAGCGATTACTTGGTGGTCAAACTGTTGCTGCACTATCTCATATTGCAGGACGCTTGGAAAGAGAAAGAGCTTCTGCTGATCCACGTATAAGAGGTCAAATACAGTCAGAGTCAGCGCAAATAGGACTTGCTATGCAGCATTTGGGTGCACTTCTACTTGAACTTGGCCGAACAATGCTGACACTGCGTATGGGACAATCTTCTGTAGAATCAGTTGTTAACGCTGGACCAGCTGTTTACATTTCTCCATCAGGGCCAAATCCTATAATGGCGCAGCCTTTTCCACTTCAGACAAGCTCCCTCTTTGGTGGCCCACTTCCCTCCTCAACTCCTGGAAATTTGGGTTCCATTGGTATTGGAGGTGCTCCTAGGAACGTGAGCATTCATATACATGCTGGTACCTCTGTTCCCATTGTTTCAGCAATTGGTTCTAGACCAAATAATGGGGAAGGGGCCCGAAGTGAACAGCTTAATGAGCCTGGTTCTGATGGTTCAAGTTCAACACGACAATTACCTGTTAGAAATGTTATAGCCACAACTATCCCATCACACCCTCCTGGTGTTGGAGTCTCTAGTAGCACGCAGACTGGGTTCAGTGTTTCTTCTTCACAGCCACCTGATTCAGCTTCATTGTCGTCTGCTTTAGCTGAAATTAATGCTCGCCTTATGAATGTTGTTGGCAGTATGCAAGGAGATAACGCAGCTCCATCAGGTGAAATTGAATCAATCAGCAGGGACTCATCTTCTGGATCTGAATCAAGACCTTCTACACTAAATGCACAGCAAGATACCATGGAACCGAATTTCTTTGGGGCTTCCAGTGCTTCCTTAGTTGGCAGTTCGTCTGAAAGTGAGCTCCAAACTGAGGCAGTCCAAACCTCTAGTAATGCTGAGAGAGATGTTTTAGTTGACGAATTTGTTTCTTCTTCCAAACAAGATTTACAAAGTTGTTCTAGTGGAGAAACTATTGTTAAACCAGAAAAAGATGGAGGCGTTTCAGCTGTCAGTGACGGACAAGATGTAACTGATCCTGCCAAGTCTGCTCCTCTAGGATTGGGTATGGGTGGCTTAGAGCGTAAGAAGCGAAACAGACCTCAACCTCCTGTGAGTAAAGTTGCTGATGATGGATCTTCTAGTTCTTCTGTCGATAAAAAGCAGACCAGAACAGATGGTCAACATATACTACAAACTCTCGCAAGTCATGGATCTGCTTTGAATTCAAGAAATGCTAATGGCCCATCCCAGCGACCCTTGCCCTCCAGTGATCGTCCCATTGATGTGGCTGGTTTAATGTCTCAGGCTTTACAAAGTCCTGCTTTGAATGGTTTGTTGGAAGGGGTTTCACAGCAAACTGGAGTTGACTCACCTGATGGTTTGAGAAATATGTTGCAGCAGTTCACCCAGAGCCCACAGCTGATGAATACAGTCAACCAAATTGTCCAACAGGTTGGCAGTCAGGATGTGGGGAATATGTTTACTGGAGCAGAAAGAGGGCAGGGTGGTGGTATTGACATTTCAAGGATGTTTCAACAGATGATGCCCATTGTATCTCGAGCTCTTGGTGGGGCAAATCCTTCCTCACTGTTCTCTATTGAAGAAGCAGAACCTGGTGCACCCCACCAAGATGGAACGGTTAACAGAGATGAATATTCTGATAATCCAAGTTTACAGCTCGACCTTCAACCACTGGCTGAGAGGATTGAGCATTTGAGTCCTTCTGTAGATATTTTCGGTGCTGTAGCTGAAAATGCTGTCCAGCTATCTGGCTTGGGAAGCCTTTCTAATGATCTTCTGGATGAGTTATGCCACAATGAGAGTCTTGCCAGGGAATATGTAGATATGTTGCGATATGATGTAAGTAAGCTGCTCGAGGGACGGTCTGAAGCGGACAAATCCTAA 2808 0.4444 MADQFSNEGSSTGNISAECSDSTVQLNIKTLDSRIYSFQVNKNMPVSLFKEKIANEIGVPVSQQRLIFRGKVLKDEHVLSEYHVENGHTLHLVERQPNQPQASGTSADEHTGTSSNQGLNSGNDVGSGPPRNRLGQISHSVVLGTFNVGEQGEGIVHDITRVIGHVLNSIGNGGQSTVNGPNAVQTSAQPGNETEGIRAGNQNPAGNQAPSGQTFHGPTFQSVSHVQIPVAAGSIPLPSLNAPIPDSLNTLIEFMNRMEQTLTQNGYQSNFSSANPGDQRVELPSNTQGMPTLEALSTVLRRAERLLGGQTVAALSHIAGRLERERASADPRIRGQIQSESAQIGLAMQHLGALLLELGRTMLTLRMGQSSVESVVNAGPAVYISPSGPNPIMAQPFPLQTSSLFGGPLPSSTPGNLGSIGIGGAPRNVSIHIHAGTSVPIVSAIGSRPNNGEGARSEQLNEPGSDGSSSTRQLPVRNVIATTIPSHPPGVGVSSSTQTGFSVSSSQPPDSASLSSALAEINARLMNVVGSMQGDNAAPSGEIESISRDSSSGSESRPSTLNAQQDTMEPNFFGASSASLVGSSSESELQTEAVQTSSNAERDVLVDEFVSSSKQDLQSCSSGETIVKPEKDGGVSAVSDGQDVTDPAKSAPLGLGMGGLERKKRNRPQPPVSKVADDGSSSSSVDKKQTRTDGQHILQTLASHGSALNSRNANGPSQRPLPSSDRPIDVAGLMSQALQSPALNGLLEGVSQQTGVDSPDGLRNMLQQFTQSPQLMNTVNQIVQQVGSQDVGNMFTGAERGQGGGIDISRMFQQMMPIVSRALGGANPSSLFSIEEAEPGAPHQDGTVNRDEYSDNPSLQLDLQPLAERIEHLSPSVDIFGAVAENAVQLSGLGSLSNDLLDELCHNESLAREYVDMLRYDVSKLLEGRSEADKS 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00948 935 MobiDBLite consensus disorder prediction 538 563 - -
Vian7g00948 935 Gene3D - 13 108 - -
Vian7g00948 935 PRINTS Ubiquitin signature 55 75 IPR019956 -
Vian7g00948 935 PRINTS Ubiquitin signature 76 97 IPR019956 -
Vian7g00948 935 MobiDBLite consensus disorder prediction 532 563 - -
Vian7g00948 935 SUPERFAMILY Ubiquitin-like 19 99 IPR029071 -
Vian7g00948 935 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 9 934 - -
Vian7g00948 935 MobiDBLite consensus disorder prediction 488 515 - -
Vian7g00948 935 SMART ubq_7 24 95 IPR000626 GO:0005515
Vian7g00948 935 MobiDBLite consensus disorder prediction 675 692 - -
Vian7g00948 935 MobiDBLite consensus disorder prediction 173 219 - -
Vian7g00948 935 MobiDBLite consensus disorder prediction 616 692 - -
Vian7g00948 935 MobiDBLite consensus disorder prediction 450 480 - -
Vian7g00948 935 FunFam Large proline-rich protein BAG6 16 109 - -
Vian7g00948 935 MobiDBLite consensus disorder prediction 577 600 - -
Vian7g00948 935 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Vian7g00948 935 MobiDBLite consensus disorder prediction 93 135 - -
Vian7g00948 935 MobiDBLite consensus disorder prediction 704 721 - -
Vian7g00948 935 CDD Ubl_ubiquitin_like 26 93 - -
Vian7g00948 935 MobiDBLite consensus disorder prediction 704 728 - -
Vian7g00948 935 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Vian7g00948 935 MobiDBLite consensus disorder prediction 93 127 - -
Vian7g00948 935 MobiDBLite consensus disorder prediction 442 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00948 Vian-Chr7 17663401 17675901 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00948 24 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.889 1.51e-10 58.2