Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00925 ATGGTTACCACTACCAAATCTCTCAATCATCCCAATCACCACTCTTCGGCTCCCTCGCAGATGCAGTCCGATGCCAACAGCCCCAAGTTCCCGCGAAAAAATCTTCCTTCGCCCTGGGCTCAAGTGGTTCGCGGCGGAGAATCGGAATCCGGGCCTGGCATTCATCAATCCCCGCCATCAACGTCATCCTCTACCTCATCACTGATTACGGACCAGGCCCTCTCGTCTGATTGTTCTCCCAAGGTCATTCCACCGTCGCCGGCAATGGACAATTCTAACACGGTTGGTGTTGCCGATAGCTCGGATGACGCCGAGGACAATGCCGATCGTTCTAAAAAACCCGTTTGGAATAAACCCTCAAACGGCGTTGTCGTCGAAACTGGGCCGGTAATGGGTGCTGAATCGTGGCCCTCGTTGTCTGCCTCCACCAAAGGTTCTGCCAAATTGCCAGCTGAATCGTCCTCCAAGACTGTTGCTGATGGATCACTCTCAACTTCTCAGGCGCCAATGACTTCACAGGCTCCTCAGAAACCCTCTAATACTAATCCAAAAGCTAATCCTGCAACAAATTATAATGTGCCTGTTAGACAAAGATCGATGAAGCGGTTAGGTGGCGGTGGCATTGTGTCTGGTCCTTCCCAGAGCAACTTCTCCAATCCTCCTCCACCACCGCCACCGCCACCTTTTCCTGTATACCATCTCCCACCAGTTAGCTATGGTATGGTACCAGTGGTACCTGAGCCTGCTTCAAGAGATCATTACCGGAACAGTAATTGGGACCCAAGAGCAATGGTGGGGGGTTTTGTGCCTGGAATGAATGAATATCTTGGTTCGTCTCACAGGAGTTATTTTGGGCATAATCCCCGAGGAGATGGTTCCTATCATAATAGCTATGGTAGCAGGCACGATCAAGATCGCCGAAATTATGGGAATAATAGAGACACTTTTGTACCTCAACCAAGGATGCCTCCAAGAGGATTACTGAGGCACCCACCTCCCAGCCCTGCTGCTTTTGTGGGCCATCAGCCCATTGGACCATTTGCTAACCCCATGGGTTTTTCTGAGTTTTATTACTATCAGCCAGTAACAATGGACCAGTTTACTGGTATGCCTTATTTCACGCCCAGCCCTTCTCCTACAACATTCTTTCCAGCTGCTGACTCTGCTCTCTCCAATATGATACAACGCCAAATTGAATATTACTTTAGTGATGCTAATTTGGTAAGAGACGAGTTTTTAAGGTCTAAAATGGATGAACAGGGTTGGGTTCCTGTTACTTTGATAGCAGACTTCCCTCGAGTTAAAAGTCTTACCACTAATGTTCAGTTGATACTGGATTCTATGAGAACTTCCACAATAGTGGAGGTGCTGGGTGACAAGTTGAGAAGACATAATGACTGGATGAAATGGCTGTCTTCTAAAACACGGTCTGGATCTACTTCCACTTCATCGTCTCCCCGTGGATCAAGATCCAATAACTTGACAGCTAATTTTCAAGCTATAACCCTGGAAGAAACTGCAGAGTCATGCAGTCTGCCTCAACTCTCCAATGGTGGTGCTACAGGAAGTAGCACTTAA 1578 0.481 MVTTTKSLNHPNHHSSAPSQMQSDANSPKFPRKNLPSPWAQVVRGGESESGPGIHQSPPSTSSSTSSLITDQALSSDCSPKVIPPSPAMDNSNTVGVADSSDDAEDNADRSKKPVWNKPSNGVVVETGPVMGAESWPSLSASTKGSAKLPAESSSKTVADGSLSTSQAPMTSQAPQKPSNTNPKANPATNYNVPVRQRSMKRLGGGGIVSGPSQSNFSNPPPPPPPPPFPVYHLPPVSYGMVPVVPEPASRDHYRNSNWDPRAMVGGFVPGMNEYLGSSHRSYFGHNPRGDGSYHNSYGSRHDQDRRNYGNNRDTFVPQPRMPPRGLLRHPPPSPAAFVGHQPIGPFANPMGFSEFYYYQPVTMDQFTGMPYFTPSPSPTTFFPAADSALSNMIQRQIEYYFSDANLVRDEFLRSKMDEQGWVPVTLIADFPRVKSLTTNVQLILDSMRTSTIVEVLGDKLRRHNDWMKWLSSKTRSGSTSTSSSPRGSRSNNLTANFQAITLEETAESCSLPQLSNGGATGSST 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00925 525 MobiDBLite consensus disorder prediction 53 79 - -
Vian7g00925 525 MobiDBLite consensus disorder prediction 1 229 - -
Vian7g00925 525 Gene3D - 383 473 IPR036388 -
Vian7g00925 525 MobiDBLite consensus disorder prediction 136 196 - -
Vian7g00925 525 SUPERFAMILY "Winged helix" DNA-binding domain 383 471 IPR036390 -
Vian7g00925 525 MobiDBLite consensus disorder prediction 86 100 - -
Vian7g00925 525 SMART la 388 464 IPR006630 -
Vian7g00925 525 MobiDBLite consensus disorder prediction 287 310 - -
Vian7g00925 525 CDD LAM 392 463 - -
Vian7g00925 525 MobiDBLite consensus disorder prediction 296 310 - -
Vian7g00925 525 Pfam La domain 394 449 IPR006630 -
Vian7g00925 525 FunFam la-related protein 1B isoform X2 380 470 - -
Vian7g00925 525 PANTHER LUPUS LA PROTEIN-RELATED 133 474 IPR045180 -
Vian7g00925 525 ProSiteProfiles La-type HTH domain profile. 384 473 IPR006630 -
Vian7g00925 525 MobiDBLite consensus disorder prediction 1 30 - -
Vian7g00925 525 MobiDBLite consensus disorder prediction 474 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00925 Vian-Chr7 17514762 17518176 Dispersed/Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00925 7 17514762 17518176 Vian7g00925 7 17514762 17518176 ECH
Vian7g00925 7 17514762 17518176 Vian4g02416 4 40810724 40814228 PCT