Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00896 ATGGGAGTCCCAGCCTTCTACCGGTGGCTGGCCGAGAAGTATCCGATGGTGATTGTGGACGCGATCGAAGAGGAACCAGTCGTCATCGACGGCATTCAAATCCCGGTCGATACGAGCAAGGAGAACCCTAACAACATCGAATACGATAACCTCTACCTCGACATGAATGGCATCATTCATCCCTGCTTTCACCCGGAGGATAGGCCTTCTCCGACGTCGTTCGATGAGGTGTTTGAGTGCATGTTTGACTACATTGACAGGCTGTTCGTTATGGTGCGGCCGCGGAAGCTCCTCTACATGGCTATTGATGGTGTTGCGCCGAGGGCGAAAATGAACCAGCAACGGTCTAGGCGGTTTAGGGCTGCGAAAGATGCAGCTGACGCGGCTACTGAAGAAGCAAGGTTAAGGGAGGAATTTGAGAAGGAGGGCAGAAAGCTTCCGCCTAAAGCAGAGTCACAGACGTTTGATTCAAATGTCATTACACCTGGAACTGAATTTATGGCTGTTTTGTCAATTGCACTTCAGTACTATGTTCATCTTAGGTTGAACAACGACCCTGGTTGGCAAAATATTAAGGTTATTCTTTCTGATGCAAATGTTCCTGGTGAAGGGGAGCATAAGATTATGTCCTATATCCGCCTGCAGAGAAATCTTAATGGTTTTGATCCAAATACACGACATTGCCTATATGGTTTGGATGCCGATTTGATTATGTTGGCATTGGCTACCCATGAAGTTCATTTTTCAATTCTTAGAGAGGTTGTATTTACTCCTGGACAAGACAAATGCTTCCTCTGTGGTCAGATGGGCCATTTGGCGGCAAACTGTGAAGGAAAGGAAAAAAGAAAGGCAGGAGAGTTTGATGAAAAAGGAGAGGCTATCGTGGCTAAAAAGCCATACCAGTTCCTGAATATTTGGACTCTAAGAGAATATCTGGAGTATGAGATGAAAATACCTAATCCTCCTTTCGAGTTTGATTTTGAATGCATTGTGGATGATTTTATCTTCATGTGCTTTTTCGTCGGCAATGACTTTCTTCCACATATGCCTACACTAGAGATTCGTGAGGGTGCAATCAACTTGCTGATAGCTGTATACAAGAAAGAATTTAGGGAATTGGGTGGTTATTTAACCAATGGTAGCACGATAAACTTAAGCAGGGTGGAGCACTTCATTCAGGCTGTTGGATCTTATGAAGATAAAATATTCCAGAAAAGAGGTCGATTGCATCAGCGGCAAGTGGAAAGAATAAAGCGTGAGAAGGCACAGGCAAAAAGGGGAGATGATACCGAGCCTCAATTTCAACCAGAGTCTTTAGTTGCAGTTTCACGATTCCATGGTTCTCGTCTTGCTTCAGCTCCAACACCATCACCATTTCAGCAAGCTGGGCATTATAACTCTCAAGTGTCCTCATCAGTTAAAAAATACCATAAAGAAACCTCTGAGAGGCCCCATAAAGTGGCTAGGTTATCTTCGGGAGCCACTCTTGCTGCTGCTATTGTTGAAGCCGAGAATAGTGTTGAAATAGAAGCTCAAGATAATAAAGATGAATTGAAAACAAAATTGAAGGAGATACTTCGTGAGAAAGCGGATGTATTCAACTCAAAAAATGCTGAAGAGGACAAGATTAAGTTGGGAGAACCAGGCTGGAAAGAGAGGTATTATGAGGAAAAATTTTCTGCTAAAACTCCTGAGGAACTTGAAGCGATACGGAAAGATGTTGTCTTGAAGTACACTGAAGGCCTATGTTGGGTGATGCACTATTATTACGAAGGTGTTTGTTCTTGGAACTGGTTTTATCCATATCACTATGCCCCCTTTGCGTCTGATCTCAAGGACCTTGGTGAACTTGATATTAGTTTTAAGCTGGGAACCCCATTCAAACCATTTGACCAGCTTCTAGGGGTCTTTCCTGCTGCCAGCTCTCATGCTCTTCCTGAGCCGTATAGGAGACTTATGACAGAACTAAACTCACCTATCATTGATTTTTATCCTGTTGATTTTGAAGTTGACATGAATGGAAAACGCTTTGCTTGGCAGGGTATTGCTAAGTTACCTTTTATTGATGAAGAGCGTCTTCTCGCAGAAGTTCAGAAGATTGAAAATTTTTTAACGCCAGAGGAAAAGCGACGGAATGCTATAATGTATGATTTGCTCTTTGTGAATTCTTGTCACCCTCTCTCTGCATGCATAAGTACACTGGACAACAAGTGTAAAAACATGTCAAACAACGAACGGGCTTTGGTGAAGGAAAAAATCAATCCCATAGAAAGTGGTGGAATGAATGGTTACTTATCTTTATGCGGTGGAGAACCTTGCCCTCCTATCTTTAGGTCTCCTGTTGCAAGCATGGAAGATATCATGGACAATCAAGTTATATGCGCAATATATAGACTTCCAGATGCTCATAAACACATTTCCCGACCGCCACAAGGAGTTAAATTTCCTATTAAGTCTGTTACCGTTGGGGATATACAGCCTGACCGTGGTTTATGGCATGAGGATTCAGGTAGGAGACATTACAATGAAAATGGGAGGAGAAACCCTCCAGGGTCTTCTGGCCGGGAGCTTGGAGAGTCTGCACACAGACTCATTCTCAATTCCTTACAGGCGAAGGTTGACTCCAATGGCTACCGTCACCCACATAATGGACCACCTATATCTTATCCTGCACCAATGGGTCATCGGCCACCGGTATCTTCCTATGGTTATGAATCACACCCAGGATACGTTGCAATGCCCCCTGTTCCTGCTCCCTCACTCCATGGCAGACCCCACTTTACACCTTACAATGCTGTCCCTACTGCTCAGCAGTATGGCTATAATCAACAATACCTACCACCCCCCGTAGCATACAATCCTCATCAGCCATCAAATTCTTACGAAAGAAATGACTATCAACACCCTGGATCACATCATTATGAAAGAAATCAGCTTCAGGGTACTGGTGGTAGTTTAAGGCATGGATATCAATCGTCAGGATACAATCAGAACGCCGGGTTTATGAACAATACGCAAGGTGGATATGCTAGTCACCATCATGATGTTAGTCATCATCACCAAGTTATTCACCACAGCCAAAACTTCCAACCATCTAGAACCCATCAGAATTGGAGTCCACGAAACAATCAGAGTGGAAACAGGGAATACGGTCATCATTCGTCCAATCAATTTTCTTTATTAGATAGAAGAGGAAACAGGAATCCAATGCCACCACCCGGTTACGATCGCCAATAG 3237 0.4371 MGVPAFYRWLAEKYPMVIVDAIEEEPVVIDGIQIPVDTSKENPNNIEYDNLYLDMNGIIHPCFHPEDRPSPTSFDEVFECMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAATEEARLREEFEKEGRKLPPKAESQTFDSNVITPGTEFMAVLSIALQYYVHLRLNNDPGWQNIKVILSDANVPGEGEHKIMSYIRLQRNLNGFDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQDKCFLCGQMGHLAANCEGKEKRKAGEFDEKGEAIVAKKPYQFLNIWTLREYLEYEMKIPNPPFEFDFECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLIAVYKKEFRELGGYLTNGSTINLSRVEHFIQAVGSYEDKIFQKRGRLHQRQVERIKREKAQAKRGDDTEPQFQPESLVAVSRFHGSRLASAPTPSPFQQAGHYNSQVSSSVKKYHKETSERPHKVARLSSGATLAAAIVEAENSVEIEAQDNKDELKTKLKEILREKADVFNSKNAEEDKIKLGEPGWKERYYEEKFSAKTPEELEAIRKDVVLKYTEGLCWVMHYYYEGVCSWNWFYPYHYAPFASDLKDLGELDISFKLGTPFKPFDQLLGVFPAASSHALPEPYRRLMTELNSPIIDFYPVDFEVDMNGKRFAWQGIAKLPFIDEERLLAEVQKIENFLTPEEKRRNAIMYDLLFVNSCHPLSACISTLDNKCKNMSNNERALVKEKINPIESGGMNGYLSLCGGEPCPPIFRSPVASMEDIMDNQVICAIYRLPDAHKHISRPPQGVKFPIKSVTVGDIQPDRGLWHEDSGRRHYNENGRRNPPGSSGRELGESAHRLILNSLQAKVDSNGYRHPHNGPPISYPAPMGHRPPVSSYGYESHPGYVAMPPVPAPSLHGRPHFTPYNAVPTAQQYGYNQQYLPPPVAYNPHQPSNSYERNDYQHPGSHHYERNQLQGTGGSLRHGYQSSGYNQNAGFMNNTQGGYASHHHDVSHHHQVIHHSQNFQPSRTHQNWSPRNNQSGNREYGHHSSNQFSLLDRRGNRNPMPPPGYDRQ 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00896 1078 MobiDBLite consensus disorder prediction 943 1078 - -
Vian7g00896 1078 Gene3D - 613 714 - -
Vian7g00896 1078 MobiDBLite consensus disorder prediction 973 1011 - -
Vian7g00896 1078 Gene3D - 1 142 - -
Vian7g00896 1078 Gene3D - 144 385 - -
Vian7g00896 1078 MobiDBLite consensus disorder prediction 827 857 - -
Vian7g00896 1078 ProSiteProfiles Zinc finger CCHC-type profile. 262 276 IPR001878 GO:0003676|GO:0008270
Vian7g00896 1078 CDD PIN_XRN1-2-like 51 312 - -
Vian7g00896 1078 Pfam XRN 5'-3' exonuclease N-terminus 1 253 IPR004859 GO:0003676|GO:0004527
Vian7g00896 1078 SMART c2hcfinal6 262 278 IPR001878 GO:0003676|GO:0008270
Vian7g00896 1078 MobiDBLite consensus disorder prediction 1023 1063 - -
Vian7g00896 1078 FunFam 5'-3' exoribonuclease 614 714 - -
Vian7g00896 1078 Pfam Xrn1 helical domain 325 824 IPR041412 -
Vian7g00896 1078 SUPERFAMILY Retrovirus zinc finger-like domains 258 283 IPR036875 GO:0003676|GO:0008270
Vian7g00896 1078 MobiDBLite consensus disorder prediction 828 845 - -
Vian7g00896 1078 PANTHER 5'->3' EXORIBONUCLEASE 1 1021 IPR027073 -
Vian7g00896 1078 PIRSF Exonuclease_Xrn2 1 1069 IPR017151 GO:0004534|GO:0005634|GO:0006139
Vian7g00896 1078 FunFam 5'-3' exoribonuclease 1 136 - -
Vian7g00896 1078 Coils Coil 508 528 - -
Vian7g00896 1078 FunFam 5'-3' exoribonuclease 149 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00896 Vian-Chr7 17257731 17270021 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00896 7 17257731 17270021 Vian7g00896 7 17257731 17270021 ECH