Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00839 ATGATGAATGCAACCATTGCAACTTCCGATGCAAGTCTCATAGCTAACAAGGGCTTTGGGATAAAAAGAACAAGCTTCTGGGGTGAGAGCACGAAGGGAAATCTTAACGTAAGATTTCCGAATACTAAACCATGGAAGAGTTTTAAGGCTGCATGTTCTAAGTCTGGCATTGCACGCGCTGTTTACACTGACCTCGACCAAGAGTATCCGGCATTGGAGCGATCAGCTTTTCAGAGTCCAAAGGCAAACCCTGAAAATGTAGCTGCCATCATATTGGGTGGAGGTGCTGGAACTCGACTCTTTCCTCTTACCCGCACAAGAGCCAAGCCCGCTGTTCCCATTGGAGGGAGTTACAGACTCATAGATATTCCGATGAGCAATTGCATCAACAGTGGCATCAGGAAAGTGTACGTTTTAACTCAGTTCAACTCTTGCTCTCTCAATGCCCACCTGTCTCGCACCTATAATTTTGGAAATGGAGTGAACTTTGGAGGTGGTTTTGTGGAGGTCTTGGCTGCTACTCAAACTCCTGGAGAATCTGGGAGCAAATGGTTCCAAGGAACAGCCGATGCAGTGAGACAATTTACCTGGGTTTTTGAGGATGCCAAGAACAAGAATATTGAAAACATAATGATAATTTCTGGTGACCATCTTTGCCGGATGGACTATATGCAGCTTGTGGAGAAACACAGTGAGAACAATGCTGATATCACAGTTTCATGTGTACCTATGGATGAAAGCGGTGCATCTGATCATGGGCTGATGAAAATTGATAGAAAGGGAATGATTACAGAGTTTGTAGGTAAACCAAATGAAGTAGACGTGAACGCAATGCGTGTTGATACCACTCTCCTAGGCTTAAGTGCAGAAGAAGCAGAGAAACATCCTTTCCTTTCTCCAATGGGTGTTTTTGTATTCAGAACTGAAGTCCTGCTGAAACTGCTAAGGTGGAGCTGTCCTTCCGGCAATGACTTAGAATCTGAAATCATCCCATCTTCTTTGAGGGACCACAAAGTCCAAGCATATATGTTCAAGAATTACTGGAAAGATATTGGAACTATCAAGTCCTTCTTTGAAGCCAATCTGGCCCTAACAGAACAGACTCCAAGATTTGAATTCTATGATCAGAAGAGGCCATTCTTCACTTCCCCAAGAAACAACCCACCCACTAGAGCAATAAAATGCAGGATTGTGGATGCAATTATTTCTCATGGCTGTTACTTGAATCATTGTAAAGTTCAACATTCTATTGTTGGTTTGCGCTCACGTTTAGAGGCTGGTTCAGAGCTTCAAGATACCATGATGATGGGTGCTGACTCCTATCAAACTGATTCTGAAATTGCAACTCTGCTGGAAACGGGAAAGGTTCCAATTGGTGTTGGAGAGAATACTAAAATCAGGAAATGCATCATTGACAAGAATGCTAAGATTGGAAGAAACGTGATCATTGCCAATGCTGATGGTGTTGAAGAAGCTGACAGGCCTGAAGAGGGATTCTACATTAGGTCTGGCATTGTAGTTGTAGTGAAGAATGCAACAATCAAACATGGAACAGTGATCTGA 1563 0.4312 MMNATIATSDASLIANKGFGIKRTSFWGESTKGNLNVRFPNTKPWKSFKAACSKSGIARAVYTDLDQEYPALERSAFQSPKANPENVAAIILGGGAGTRLFPLTRTRAKPAVPIGGSYRLIDIPMSNCINSGIRKVYVLTQFNSCSLNAHLSRTYNFGNGVNFGGGFVEVLAATQTPGESGSKWFQGTADAVRQFTWVFEDAKNKNIENIMIISGDHLCRMDYMQLVEKHSENNADITVSCVPMDESGASDHGLMKIDRKGMITEFVGKPNEVDVNAMRVDTTLLGLSAEEAEKHPFLSPMGVFVFRTEVLLKLLRWSCPSGNDLESEIIPSSLRDHKVQAYMFKNYWKDIGTIKSFFEANLALTEQTPRFEFYDQKRPFFTSPRNNPPTRAIKCRIVDAIISHGCYLNHCKVQHSIVGLRSRLEAGSELQDTMMMGADSYQTDSEIATLLETGKVPIGVGENTKIRKCIIDKNAKIGRNVIIANADGVEEADRPEEGFYIRSGIVVVVKNATIKHGTVI 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00839 520 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 72 385 IPR029044 -
Vian7g00839 520 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 184 192 IPR005836 GO:0005978|GO:0008878
Vian7g00839 520 SUPERFAMILY Nucleotide-diphospho-sugar transferases 86 481 IPR029044 -
Vian7g00839 520 CDD LbH_G1P_AT_C 388 514 - -
Vian7g00839 520 NCBIfam glucose-1-phosphate adenylyltransferase 87 484 IPR011831 GO:0005978|GO:0008878
Vian7g00839 520 SUPERFAMILY Trimeric LpxA-like enzymes 385 520 IPR011004 -
Vian7g00839 520 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 54 520 IPR011831 GO:0005978|GO:0008878
Vian7g00839 520 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 93 112 IPR005836 GO:0005978|GO:0008878
Vian7g00839 520 Gene3D Hexapeptide repeat proteins 387 520 - -
Vian7g00839 520 Pfam Nucleotidyl transferase 89 366 IPR005835 GO:0009058
Vian7g00839 520 CDD ADP_Glucose_PP 89 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00839 Vian-Chr7 16648680 16652192 Dispersed/Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00839 7 16648680 16652192 Vian4g02333 4 40068486 40071930 PCT