Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00828 ATGCCATTCAGAAGCATAGTGCGTGAGCTCAAGGAGATTGGAGAGGGTATCAGCAACATGTATAGAAGAGGGGGAGAGGGAAAGCATGTGCATCGCCATGGTAAATCTCACATTGCACCAGAATGTTCTCTACCACCATCCTCCTCCTCCTCCTCCTCCTCATCATCATCATCATCTTCTTCCTCTTCTTCATCACAGAGCCGGTGGGCTAACTTACCACCAGAGTTGCTTTTAGACATAATTCAAAGGTTGGAAGCCAGTGAAACCTCATGGCCTGCACGTAGAGCACTTGTGGCATGTTCCTCAGTTTGTAGGCTGTGGAGAGAGATAACAAAGGATGTGGTCAAGACACCAGAACAGTGTGGTTTGCTCACTTTTTCTATATCACTGAAGCAGCCTGGCCCAAGAGACTCACCAATCCAGTGTTTTATTAGGAGAGAAAGAGTGTCTTCAACATATTGTTTATATCTCGGCCTGAGCCCTGTTAACTTTTGCTTCATATGCTCATTAAATCACCTTATTGGAAGTGAATCACTGTATGCTACTGCTGAGATATCACTTTCTGGTGATATGAGCAAACTGTTACTAGCAGCAAAGAAGATTCGAAGGGCAACATGTACAGAATTTTTAATATCATTGGTTGCTGATGATTTCTCTCGATCAAGCAACACTTACATTGGAAAGTTGAGGTCTAATTTTCTTGGCACCAAGTTCATGATTCTGGATGGCGACTCCCCACATGATTCTTCACTTCCATTGAACTGCAAGTTGCAGCAAAGAGTCCATCTGAAGCAGGTACTTCCCAAGGTTGCTGCTGCTGCTAACTACAAAGTAGCCACAGTATCTTATGAACTCAATGTCCTCCGAACAAGAGGTCCAAGGCGAATGCGGTGTACGATGCACTTGATACCCATATCTGCAATCCAAGAAGGAGGAAGTGCTCCAACTCCTTTGAAGTTTACAAATTATCTTCATGAGCATGTATCTACCAACACCACCACCTCAGATTCAAAAGGAAGGAAGCCAGAAATTGTTGAGTTTGACACAAATGACACTGAAAATACTCAAGAATCAAGCCAGAGGGCAAGGGAACCATTGGTTTTGAAAAACAAGGCCCCTAGATGGCATGAACAACTACAATGCTGGTGCTTGAATTTCAAGGGAAGGGTTACAGTGGCCTCTGTGAAGAACTTCCAGCTCGTGGCAGCTGCTGAACCATGCCAAAATGTTTCAGCTGCTGAACAAGAAAAAGTGATACTACAATTTGGAAAAATTGGGAAGGACATATTCACCATGGATTACCGATACCCCCTCTCAGCTTTTCAAGCCTTTGCAATATGTTTGAGCAGCTTTGACACAAAACCAGCTTGTGAATGA 1377 0.4379 MPFRSIVRELKEIGEGISNMYRRGGEGKHVHRHGKSHIAPECSLPPSSSSSSSSSSSSSSSSSSSQSRWANLPPELLLDIIQRLEASETSWPARRALVACSSVCRLWREITKDVVKTPEQCGLLTFSISLKQPGPRDSPIQCFIRRERVSSTYCLYLGLSPVNFCFICSLNHLIGSESLYATAEISLSGDMSKLLLAAKKIRRATCTEFLISLVADDFSRSSNTYIGKLRSNFLGTKFMILDGDSPHDSSLPLNCKLQQRVHLKQVLPKVAAAANYKVATVSYELNVLRTRGPRRMRCTMHLIPISAIQEGGSAPTPLKFTNYLHEHVSTNTTTSDSKGRKPEIVEFDTNDTENTQESSQRAREPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPCQNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00828 458 MobiDBLite consensus disorder prediction 329 364 - -
Vian7g00828 458 ProSitePatterns Tub family signature 1. 386 399 IPR018066 -
Vian7g00828 458 SUPERFAMILY Tubby C-terminal domain-like 118 458 IPR025659 -
Vian7g00828 458 PRINTS Tubby superfamily signature 225 249 IPR000007 -
Vian7g00828 458 PRINTS Tubby superfamily signature 209 225 IPR000007 -
Vian7g00828 458 PRINTS Tubby superfamily signature 415 434 IPR000007 -
Vian7g00828 458 PRINTS Tubby superfamily signature 436 458 IPR000007 -
Vian7g00828 458 PRINTS Tubby superfamily signature 368 385 IPR000007 -
Vian7g00828 458 PRINTS Tubby superfamily signature 275 302 IPR000007 -
Vian7g00828 458 PRINTS Tubby superfamily signature 386 402 IPR000007 -
Vian7g00828 458 MobiDBLite consensus disorder prediction 42 68 - -
Vian7g00828 458 MobiDBLite consensus disorder prediction 19 68 - -
Vian7g00828 458 SUPERFAMILY F-box domain 57 113 IPR036047 GO:0005515
Vian7g00828 458 Gene3D - 62 115 - -
Vian7g00828 458 MobiDBLite consensus disorder prediction 349 363 - -
Vian7g00828 458 PANTHER TUBBY-RELATED 34 456 - -
Vian7g00828 458 Gene3D Tubby Protein; Chain A 125 458 IPR025659 -
Vian7g00828 458 Pfam Tub family 130 453 IPR000007 -
Vian7g00828 458 CDD F-box_AtTLP-like 69 113 - -
Vian7g00828 458 Pfam F-box domain 69 116 IPR001810 GO:0005515
Vian7g00828 458 ProSitePatterns Tub family signature 2. 443 458 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00828 Vian-Chr7 16556906 16559134 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vian7g00828 Tub 1.4e-99 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00828 7 16556906 16559134 Vian7g00828 7 16556906 16559134 ECH