Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00778 ATGTTTGGTGAAAGCTTTCCCCGATCACAGTACATGCAATCGGAGCCCAGAATGTCCAACACGGAGGCTTTAACCGACGACGAGTACACAATGCGGACTAGCAGTTCAGCGTCGCCGATGAGTCCTTATTTCTACGACCAGGGTAGGCTCAGCGGCGAGGGTTCTCCCATGATGATGTCGCCGTGGAACCAGACCGCCAGTTCGCCGTTTCAGAAGGTGCAGTGGTTGCCGGATGATGACGGCGGGAGCTTGCCTCAGAACGCTCTCGTAGGTTCTCTTGTCCGAGAGGAGGGACACATATACTCGCTGGCGGCTACCGGCGACCTCTTGTACACGGGGTCCGACAGCAAGAACATTCGCGTGTGGAAGAACCTGCAGGAGTATTCTGGGTTCAAATCCAACAGCGGATTGGTCAAAACCATAATTCTGTCGGGACAGAAAATCTTCACGGGGCACCAGGACGGCAAAATCCGCGTCTGGAAGGTGTCGCCGAAGAACCCGAGCGTGCACAAACGCGCCGGCACGTTGCCCACGCTTAAAGACATCTTCAAGAGCTCCATTAAACCCAGCAACTACGTCGAGGTTCGGCGACACAAAACGGCGTTGTGGATAAAACATTCGGACGCCGTTTCGTGTTTGAGTCTCTCCGATAACAAGATGTATCTATACTCTGCGTCGTGGGACAGAACGATCAAGGTGTGGAGGATCGCCGACTCCAAATGCCTCGAGTCCATCCACGCGCACGACGACGCCGTCAACGCGGTGGTGTGCGGCGAAGACGGGATGATGTTTTCGGGGTCGGCTGACGGCACGGTGAAGGTGTGGCGGCGGGAGCCTCGGGGGAAGGGGTTGAAGCACACTGCGGTGAAAACGCTGCTGAAGCAGGAGTGCGCGGTGACGGCGCTGGCGGTGGACACGGATGCTTCGATGGTTTACTGCGGCGCCTCCGATGGGCTAGTGAACTTCTGGGAGGGCGAGAAGGGTTACACGCACGGCGGCGTCCTGAAGGGCCACAAGCTCGCCGTGCTGTGCCTCACCGCCGCGGGGACGTTAGTGTTCAGCGGGTCCGCAGATAAGACCATATGCGTGTGGAGAAGAGAAGGTGTGATTCACACGTGCGTGTCTGTTCTCACTGGTCACGACGGTCCCGTGAAGTGCCTGGCCGTGGAGGAGGACCGCGAAGCCGCCGGCAGCAGAGACCGGCGCTGGGTTTTGTACAGTGGCAGTTTGGACAAATCGGTTAAGGTTTGGAGCGTGTCGGAATCGATGAACAATTATCAGGCGCAGCATCAGCGCATGATATCTGATGCGGAGTCGCTGCCGTCCATCTCCGACAGTAGCCTCTCTTCGGGCTGGGCCAGTGGGAGAAACTGA 1374 0.5786 MFGESFPRSQYMQSEPRMSNTEALTDDEYTMRTSSSASPMSPYFYDQGRLSGEGSPMMMSPWNQTASSPFQKVQWLPDDDGGSLPQNALVGSLVREEGHIYSLAATGDLLYTGSDSKNIRVWKNLQEYSGFKSNSGLVKTIILSGQKIFTGHQDGKIRVWKVSPKNPSVHKRAGTLPTLKDIFKSSIKPSNYVEVRRHKTALWIKHSDAVSCLSLSDNKMYLYSASWDRTIKVWRIADSKCLESIHAHDDAVNAVVCGEDGMMFSGSADGTVKVWRREPRGKGLKHTAVKTLLKQECAVTALAVDTDASMVYCGASDGLVNFWEGEKGYTHGGVLKGHKLAVLCLTAAGTLVFSGSADKTICVWRREGVIHTCVSVLTGHDGPVKCLAVEEDREAAGSRDRRWVLYSGSLDKSVKVWSVSESMNNYQAQHQRMISDAESLPSISDSSLSSGWASGRN 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00778 457 ProSiteProfiles Trp-Asp (WD) repeats profile. 377 427 IPR001680 GO:0005515
Vian7g00778 457 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 36 422 IPR045182 -
Vian7g00778 457 MobiDBLite consensus disorder prediction 7 42 - -
Vian7g00778 457 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 245 275 - -
Vian7g00778 457 ProSiteProfiles Trp-Asp (WD) repeats profile. 335 364 IPR001680 GO:0005515
Vian7g00778 457 SMART WD40_4 328 365 IPR001680 GO:0005515
Vian7g00778 457 SMART WD40_4 124 161 IPR001680 GO:0005515
Vian7g00778 457 SMART WD40_4 370 418 IPR001680 GO:0005515
Vian7g00778 457 SMART WD40_4 196 235 IPR001680 GO:0005515
Vian7g00778 457 SMART WD40_4 86 123 IPR001680 GO:0005515
Vian7g00778 457 SMART WD40_4 285 324 IPR001680 GO:0005515
Vian7g00778 457 SMART WD40_4 238 276 IPR001680 GO:0005515
Vian7g00778 457 PRINTS G protein beta WD-40 repeat signature 222 236 IPR020472 -
Vian7g00778 457 PRINTS G protein beta WD-40 repeat signature 263 277 IPR020472 -
Vian7g00778 457 PRINTS G protein beta WD-40 repeat signature 405 419 IPR020472 -
Vian7g00778 457 ProSiteProfiles Trp-Asp (WD) repeats profile. 203 244 IPR001680 GO:0005515
Vian7g00778 457 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 275 IPR001680 GO:0005515
Vian7g00778 457 Gene3D - 285 456 IPR015943 GO:0005515
Vian7g00778 457 Gene3D - 75 196 IPR015943 GO:0005515
Vian7g00778 457 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 203 236 - -
Vian7g00778 457 MobiDBLite consensus disorder prediction 1 43 - -
Vian7g00778 457 Gene3D - 197 284 IPR015943 GO:0005515
Vian7g00778 457 Pfam WD domain, G-beta repeat 240 275 IPR001680 GO:0005515
Vian7g00778 457 Pfam WD domain, G-beta repeat 372 418 IPR001680 GO:0005515
Vian7g00778 457 Pfam WD domain, G-beta repeat 206 234 IPR001680 GO:0005515
Vian7g00778 457 Pfam WD domain, G-beta repeat 97 123 IPR001680 GO:0005515
Vian7g00778 457 Pfam WD domain, G-beta repeat 333 364 IPR001680 GO:0005515
Vian7g00778 457 FunFam BnaA09g28200D protein 193 280 - -
Vian7g00778 457 SUPERFAMILY WD40 repeat-like 91 425 IPR036322 GO:0005515
Vian7g00778 457 CDD WD40 97 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00778 Vian-Chr7 16053787 16055477 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01349 4 27352136 27356096 Vian7g00778 7 16053787 16055477 PCT