Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00774 ATGGGGTGTGACTGTGGGGGGAAGTTAAATTTGAGAAAGCCTCATTTTTATGAGGTTTATTCCTCTGCCTTCAGCTCTCATAGACTGAAAATTCCAGATGGATTTGTGTGTCGCATGGAGGGAAGGACGTACGGGTCATTTTCATTGACTGGTCCCAGTGGAAACGTATGGACAGTGCACTTACTTAAGCAGGACAATGATCTATTCTTCCATCATGGATGGTCGTCATTTGTGGTGGATCATCGTCTAGAATGTGGTGACCTTTTGGTTTTCAGATACGAAGGTCACTTGCATTTCACCGTCCAAGTATTTGATAAGGATGGATGTGAGAAAGAGGCAGCATTTATGTCTGAATGTAGTCAAAGTTCGAGTGACTTTGAGGAAATTGTTGGACAGAAAAGAGATGTGAAGGAGAGTTCTTCTTTGGATATTGCATTTGATGGTGTTGCTAAGAAAAGGAGAGGTTGTAAATATGAGAACCGGGAACATGAACCAGGGTTTGTTGGTAAAGAACTATTGCGATATGAGGTAGTAAGACCGATTAGAATGTTCAGAGAAACTGAAGAAACTTCGAAAGCTTGTTTGGCTAATGATAGCCTTGTGCCTTTTCACATGGACCATCGAAATGAAGAGGCTGCCATCCTGTACAGAAATGGAAAGGAAGATGGTCATTATTTTCTTGGTGGAGTTTCATTATCAAATGTATCAGCACAAGATGAGAAAAAAGTTGCTCAGTCTTTTACTTCCAAATTTCCGTATTTTGTTAGAATCATGAAAAGCTTCAATGTCAGTGGTTCATATACTCTGAATATCCCATATCAGTTTTCCATGGCGCACCTTCCCAATTGCAAGATAAAGATTATTCTTCATAATTTGAAAGGAGAACATTGGACTGTCAATTCTGTGCCAACAACTAGAGTGCATACTAGTCACACACTTTGTGGAGGATGGATGGCTTTCGTTCGTGGTAATAACATTAAGATTGGAGATATCTGTATTTTTGAGCTTGTGAACGAGTGTGAATTACGTGTTCACATTGCTGGGGTTGGAAAAGATGGTCTAGAAGACGACCAGGTTGGAAGAGTGAATGCAGGGCATGCTGGAACTACCAGATATATGCCAATGAATGCTAAAGTAAACTCAAAGTCCATAAGAAAAGTTGATCTATCAGATAAAAAATGGCCCAAGATTGGTCAAGAAACTGTTTTATCCATTGACCTTAAGAAATCTGGTAGAGCTTCAAATACTTCTAAGAAGATGGGCCTTTGCCCTCAGTCCAAAGCTGCCCATAAAAAGTTGGCTACTCCGAGGAGACATCGGGTTGAAGATGAGCTAAGCTCACAGGCTAAATCTGGTTTGAGAATGTTGTTTGCACTGGATGAACAAAGAGTAGCTCAAGCTTTTAGTTCCCCTTTTCCCAGTTTTGTTAAAATCATGAAAATGTTCAATGTCAGTGGCTCATACACTTTGAAAATTCCATACCAGTTCTCAGCTGCACATCTCCCAACTTACAAAACTGAAGTTATACTTCGTAATTCAAGAGGTGAATGTTGGACTGTGAACTCTGTACCAGATGCAAAAGGCCGAACAGTTCACACCTTTTGTGGGGGTTGGATGGCCTTTGTTCGTGACAATGACATAAATTTTGGTGACACATGCATTTTTGAACTGGTTACTCAATGTGAGATGCAGGTGTACATATCTGGGGTCGGAAAGGAAGGGCCTGACCATCAAAATGCCCACTTAAAACTTGACAGATTGTCTATCCTTCCATCTACCTGCTAA 1785 0.4067 MGCDCGGKLNLRKPHFYEVYSSAFSSHRLKIPDGFVCRMEGRTYGSFSLTGPSGNVWTVHLLKQDNDLFFHHGWSSFVVDHRLECGDLLVFRYEGHLHFTVQVFDKDGCEKEAAFMSECSQSSSDFEEIVGQKRDVKESSSLDIAFDGVAKKRRGCKYENREHEPGFVGKELLRYEVVRPIRMFRETEETSKACLANDSLVPFHMDHRNEEAAILYRNGKEDGHYFLGGVSLSNVSAQDEKKVAQSFTSKFPYFVRIMKSFNVSGSYTLNIPYQFSMAHLPNCKIKIILHNLKGEHWTVNSVPTTRVHTSHTLCGGWMAFVRGNNIKIGDICIFELVNECELRVHIAGVGKDGLEDDQVGRVNAGHAGTTRYMPMNAKVNSKSIRKVDLSDKKWPKIGQETVLSIDLKKSGRASNTSKKMGLCPQSKAAHKKLATPRRHRVEDELSSQAKSGLRMLFALDEQRVAQAFSSPFPSFVKIMKMFNVSGSYTLKIPYQFSAAHLPTYKTEVILRNSRGECWTVNSVPDAKGRTVHTFCGGWMAFVRDNDINFGDTCIFELVTQCEMQVYISGVGKEGPDHQNAHLKLDRLSILPSTC 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00774 594 CDD B3_DNA 21 105 IPR003340 GO:0003677
Vian7g00774 594 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 27 352 IPR044837 -
Vian7g00774 594 Gene3D - 8 109 IPR015300 -
Vian7g00774 594 ProSiteProfiles B3 DNA-binding domain profile. 254 350 IPR003340 GO:0003677
Vian7g00774 594 SMART B3_2 16 107 IPR003340 GO:0003677
Vian7g00774 594 SMART B3_2 254 352 IPR003340 GO:0003677
Vian7g00774 594 SMART B3_2 475 571 IPR003340 GO:0003677
Vian7g00774 594 ProSiteProfiles B3 DNA-binding domain profile. 475 571 IPR003340 GO:0003677
Vian7g00774 594 SUPERFAMILY DNA-binding pseudobarrel domain 10 109 IPR015300 -
Vian7g00774 594 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Vian7g00774 594 CDD B3_DNA 252 346 IPR003340 GO:0003677
Vian7g00774 594 SUPERFAMILY DNA-binding pseudobarrel domain 468 569 IPR015300 -
Vian7g00774 594 Pfam B3 DNA binding domain 475 562 IPR003340 GO:0003677
Vian7g00774 594 Pfam B3 DNA binding domain 21 106 IPR003340 GO:0003677
Vian7g00774 594 Pfam B3 DNA binding domain 254 346 IPR003340 GO:0003677
Vian7g00774 594 Gene3D - 234 349 IPR015300 -
Vian7g00774 594 Gene3D - 460 570 IPR015300 -
Vian7g00774 594 SUPERFAMILY DNA-binding pseudobarrel domain 247 348 IPR015300 -
Vian7g00774 594 CDD B3_DNA 473 567 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00774 Vian-Chr7 15996841 16000218 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vian7g00774 B3 1.8e-12 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00774 7 15996841 16000218 Vian7g00774 7 15996841 16000218 ECH