Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00767 ATGAGAAGAACCAAACGATGTTCTTCTTCATCCTCTTCTCATTCTTCTGAATCCAATCCTAGTAATAATCATAACAGCAACAATGGTGTTAGAGTAAGAGGGACGTGGAGTGCGGAAGAAGATAGGGTTCTGACTGGGCTTGTGGAGGCCCATGGGCCGAAAAACTGGGCCTTGATAAGCCTACACGTAAAGGGCCGGTCTGGGAAGTCGTGCAGGTTACGGTGGTGCAACCAGCTAAGTCCAACGGTGGAGCACCGACCGTTCACCACGCGTGAGGACGCGATTATCTTGCACGCGCACGACCGGTTAGGGAATAAGTGGGCCGCCATTGCGAGATTGCTTCCGGGCCGGACCGATAACGCCGTTAAGAACCACTGGAACGCCACGCTCAAGCGCAGGGCCTCCCAACGACGTCGTTTTGGGGATGACCCATTGACTGCGCTGACTCTGGCGCCGCCGGGTAGCGGCGGCGGAGGTTGGACGGGGGGGTTTCGCGATGTGGTTGCGAGGGAAGTCAGAGAATATGTGTCTTTCTCGTTTTCCGACAAGTTGGGCTCTAACGAGAAATTATCCAAATACTAA 582 0.543 MRRTKRCSSSSSSHSSESNPSNNHNSNNGVRVRGTWSAEEDRVLTGLVEAHGPKNWALISLHVKGRSGKSCRLRWCNQLSPTVEHRPFTTREDAIILHAHDRLGNKWAAIARLLPGRTDNAVKNHWNATLKRRASQRRRFGDDPLTALTLAPPGSGGGGWTGGFRDVVAREVREYVSFSFSDKLGSNEKLSKY 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00767 193 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 134 IPR017930 -
Vian7g00767 193 FunFam MYB transcription factor 33 84 - -
Vian7g00767 193 CDD SANT 35 77 IPR001005 -
Vian7g00767 193 MobiDBLite consensus disorder prediction 8 31 - -
Vian7g00767 193 PANTHER MYB PROTEIN-RELATED 33 139 - -
Vian7g00767 193 ProSiteProfiles Myb-like domain profile. 33 79 IPR001005 -
Vian7g00767 193 SUPERFAMILY Homeodomain-like 32 126 IPR009057 -
Vian7g00767 193 CDD SANT 87 130 IPR001005 -
Vian7g00767 193 Pfam Myb-like DNA-binding domain 33 79 IPR001005 -
Vian7g00767 193 Pfam Myb-like DNA-binding domain 87 127 IPR001005 -
Vian7g00767 193 SMART sant 84 132 IPR001005 -
Vian7g00767 193 SMART sant 32 81 IPR001005 -
Vian7g00767 193 Gene3D - 32 84 - -
Vian7g00767 193 MobiDBLite consensus disorder prediction 1 31 - -
Vian7g00767 193 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 83 IPR017930 -
Vian7g00767 193 Gene3D - 86 143 - -
Vian7g00767 193 ProSiteProfiles Myb-like domain profile. 80 130 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00767 Vian-Chr7 15924556 15925137 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian7g00767 Myb_DNA-binding 3.5e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00767 7 15924556 15925137 Vian7g00767 7 15924556 15925137 ECH
Vian7g00767 7 15924556 15925137 Vian4g02273 4 39581125 39581787 PCT