Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00722 ATGCACATTCCAGCCAAAGAAAGAAACAATGAGGAAGCAGAGTGGACAACAAAGTTATTGTTGGTAGTAGCAGTACTGCTTCTGTGGGTGTGGTCAGAGGCTACAGCTAATGCAAATGATGATGAGATAAAAAGGAGCAGCATAGAGAAGTGTTCAAGGTTGAAGTCGAAGAATGTTGTGAACATTGGAGCAGCCGTAGAGTTGAGTTCTCGAGTGGGAAAGGAAGAGAAGATAGCAATGGAAGTTGCAATTGAAGATGTGAATCGACAGAGCTGCTATGAGCTTGCCTTGAACTACAGTTATAACTTTCATCGCAACCCATCATCTCCCACCATCTTCGCTGCTGATCTTGCAAACAACAAACAAGTGCAAGTTGTCGTAGGAACAAAACTCGATGCAGCAACATTATTCCTCTCCATTGACGAAAACTCAAAGGATGTTCCCATCATATCTCTAACCTCAACAGCTACTCCAGAAATAGCTTCAATCCCATTGCCACACTTCATCCAAATGGGCCATGAAGTCACCCTTCACATGCACTGCACTGCATCCATCATACACCAATTCCATTGGCGAAAGGTTACAGCAATTTACGAACACAACAATCTCTTTGCCTCTCATTCAGAGATACTGACAAGACTCTCTTACTCTCTGCGCCTGGTCAATGCTGAAATCGATCACCATGTAGCTTTTGCTTCAATGACCCTTCTCTCAAACCCAACAAAGATCATAGAACACGAGCTTACAAGGCTCAAGAGCAAGAGCAATAGGGTGTTCTTGCTTATTCAATCCTCCTTGGAGTTTGCCACTTTGCTTTTTCAGAAGGCAAAGCAAATGGGAATGATGGAAAAAGGGTCAGTGTGGATCATTGCAGATGATGTAGCCAACCACCTTGATTCCCTTGATCCTTCTGTCACTTTCAACATGCAAGGTGTCATGGGGTGCAAAACCAACTTCATGGAAGTGAGTGAAAGGTTCAAACGTTTCAAGTTCATGTTTAGGAGAAGGTTTGCACTGGAATACCCTGAGGAAGAAAGATTGCATCCGAGTGTCTTTGCTCTCAGGGCTTATGATGCTGTTTGGACCATTGCTAAAGCCTTGGAGAGCTCACAGGGAAACTTTTCCTTATCAGAAAATATTTTGCATAGTGATCACGAGGGCCTTAGTGGGAAGATAAGGTTCAAAGGAAGAATGTTATTGGAATCACCAACCTTTAAGATTGTCAATGTTGTTGGAAAAGGTTACAAAGAGTTAGCATATTGGTCAATGGAGTCTGGTTTGAGTGAGAGCCTTGTTGAGCATGAGGTGGTGAACACAACAACAACTAGTGCTGGTTCTGCTAGATTGCTTTTAAGTTCTGTGGATTGGCCTGGTGGGTTGAAAACAGTTCCAAAAGGTTGGGTGTATAATAGCAGTGAGGGAAAGCCTTTGAAAATTGGGGTTCCCGCTGTTGATCCATGTCCTCAGTTTGTGAATGTGAGCCATGATAAGAGACTGAATGAAACCCAATTCACTGGTTTCTCAATCAATGTCTTTGAATCAGTTGTGCAACGCCTGCCTTATCACCTGCCTTTTGTTTTTGTGCCATTTTATGGCTCTTACGATCAGATAGTTGAACAAGTGAACAATAAGTACCTTGATGCTGCTGTGGGGGATATACAAGTGGTGGAACATAGATATGCATTTGCTGAATTCAGTCATCCATATGTTGAATCTGGCATAGCCATGGTGGTGAAAGTAAAGCCAGATAGATCCAAAGAAACCTGGATGTTCATGGACGCTTTCACAAAAGAAATGTGGATGCTGATGGCAGCAATGCATCTGTTCATAGCATTTGTAATCTGGTTCATTGAAGGTGAAAACAATTCGGAGCTGAAGAGTCTTGGGGCCATTCTCTGGTTTTCTGTCACAACATTGTTCTTCATACACAGAGAACCAGTAAATAGCAACTTGGCCAGAGTAGTGCTAGCACCTTGGTTATTTGCTATTCTGATTGTGACACAAAGTTTTACTGCGAGCCTTTCATCCATGATGACAGTGTCCCATCTTGAACCAGCTGTGCCTGATATACAAACACTGCTGAAGACAAATGCAATCATAGGGTGCAATAAGAACACTTTTTTGGTCCATTACTTAGTTGATGAACTCAAATTCCAGCCACAGAATATCAGGGTCTTTGACTCCATCCATGATTTCCCAAGAGCATTTGAGAACAAAGAAATTGTGGCTTCTTTCACCATTGCCCCTCATGCTGATGTCTTCCTAGCCACCTATTGCAAAGGCTACATCAAAGCAGGACCTACCTTGAAGCTTGGTGGATTAGGCTTCGCATTTCCAAAAGGTTCAAGTTTAGCAATTGACATATCCCGAGCAACCTTAAAGGCCATAGAAAGTGGAGAAGTGCAAAAGCTAGAAGAGAAAATGTTGTCTACAACGAATTGTGGATCTACAAACAACAAAATACAAAATGAACAACTTGGTCCTCAACCTTTCTTTGGCTTGTTTGGCATTTGTGGAAGCATTGCTGTCATAGGTTTATTGGCAACCATTGTTCACTTTGTTAAAAGGAAAGCACAAACATTTATGAATTACCTATTACTGTCACAGTTACAGAGAGGATTGCAGATAATCAAACTTTTTGCTCAAAAGCATCCATACAAGTACAGAAAGACTGCACCTGCCCAAGATGCAAATAGTAGAGAGAATGTATCTCAAAACAATGAGGTAGCTACACCAAGTATTGAGTTACCAATTAACTTCCACACATGA 2769 0.4189 MHIPAKERNNEEAEWTTKLLLVVAVLLLWVWSEATANANDDEIKRSSIEKCSRLKSKNVVNIGAAVELSSRVGKEEKIAMEVAIEDVNRQSCYELALNYSYNFHRNPSSPTIFAADLANNKQVQVVVGTKLDAATLFLSIDENSKDVPIISLTSTATPEIASIPLPHFIQMGHEVTLHMHCTASIIHQFHWRKVTAIYEHNNLFASHSEILTRLSYSLRLVNAEIDHHVAFASMTLLSNPTKIIEHELTRLKSKSNRVFLLIQSSLEFATLLFQKAKQMGMMEKGSVWIIADDVANHLDSLDPSVTFNMQGVMGCKTNFMEVSERFKRFKFMFRRRFALEYPEEERLHPSVFALRAYDAVWTIAKALESSQGNFSLSENILHSDHEGLSGKIRFKGRMLLESPTFKIVNVVGKGYKELAYWSMESGLSESLVEHEVVNTTTTSAGSARLLLSSVDWPGGLKTVPKGWVYNSSEGKPLKIGVPAVDPCPQFVNVSHDKRLNETQFTGFSINVFESVVQRLPYHLPFVFVPFYGSYDQIVEQVNNKYLDAAVGDIQVVEHRYAFAEFSHPYVESGIAMVVKVKPDRSKETWMFMDAFTKEMWMLMAAMHLFIAFVIWFIEGENNSELKSLGAILWFSVTTLFFIHREPVNSNLARVVLAPWLFAILIVTQSFTASLSSMMTVSHLEPAVPDIQTLLKTNAIIGCNKNTFLVHYLVDELKFQPQNIRVFDSIHDFPRAFENKEIVASFTIAPHADVFLATYCKGYIKAGPTLKLGGLGFAFPKGSSLAIDISRATLKAIESGEVQKLEEKMLSTTNCGSTNNKIQNEQLGPQPFFGLFGICGSIAVIGLLATIVHFVKRKAQTFMNYLLLSQLQRGLQIIKLFAQKHPYKYRKTAPAQDANSRENVSQNNEVATPSIELPINFHT 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00722 922 Gene3D - 474 600 - -
Vian7g00722 922 Pfam Bacterial extracellular solute-binding proteins, family 3 501 808 IPR001638 -
Vian7g00722 922 Gene3D - 773 807 - -
Vian7g00722 922 Gene3D - 353 473 - -
Vian7g00722 922 Pfam Ligand-gated ion channel 809 839 IPR001320 GO:0015276|GO:0016020
Vian7g00722 922 SMART GluR_14 478 811 IPR001320 GO:0015276|GO:0016020
Vian7g00722 922 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 60 891 IPR015683 -
Vian7g00722 922 CDD GluR_Plant 475 809 - -
Vian7g00722 922 Pfam Receptor family ligand binding region 77 411 IPR001828 -
Vian7g00722 922 Gene3D - 698 772 - -
Vian7g00722 922 Gene3D - 176 346 - -
Vian7g00722 922 Gene3D - 51 175 - -
Vian7g00722 922 SUPERFAMILY Periplasmic binding protein-like I 57 467 IPR028082 -
Vian7g00722 922 FunFam Glutamate receptor 178 347 - -
Vian7g00722 922 FunFam Glutamate receptor 588 721 - -
Vian7g00722 922 PIRSF IGluLR_plant 14 915 IPR017103 -
Vian7g00722 922 SUPERFAMILY Periplasmic binding protein-like II 453 807 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00722 Vian-Chr7 15450883 15456096 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00722 59 855 Ion Channels AT2G17260 30.024 3.34e-115 373