Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00714 ATGGCTGGTGACATGCACCAACCACAATCCTCTCTTGGCAGAACCTTCCCTCCTAATTCAGAAGATTTCTCAACCTTCTTCAACCAACTCCTCCACAACCCTCCCACACCAGGAATGGACCCTAATCATTCTGCTTCTGATTTCACCCCAAACAACCTCAACAACAACAACCCTGTTCCTTCCTCTCCCTCAACTTTTCATTTCTCTCAACCCCATCACTACATCCCTGCAACTGATGCCAACACCTTCAAACAACACAACAATAATCACAACCCTGATTTCACTTCTTCTTCTGAGAAGAGTGTGGAGGCAACGAAACCTGTCCCACCACCACGTTCTTCGTCAAAGAGGAGTAGAGCTGCAGAGTTCCATAATTTGTCTGAAAAGAGAAGAAGGAGTAGGATTAACGAGAAAATGAAAGCCTTGCAGAATTTAATTCCGAATTCTAACAAGACAGACAAAGCTTCAATGCTAGATGAGGCCATAGAATATTTAAAGCAGCTTCAGCTTCAAGTGCAAATGTTAATGATGAGAAATGGTTTGAGCTTGCATCCAATGTCTTTGCCAGGAGAACTAAGACCTGTGATAATGCCTCAGACTGGGCTGAACCTTGATGAGAGTGATGGACTTCAGAATTCTACTAGTGCAATTGCATCATCTTCAAATGAAGAAAGCTTGGTTCGGCATGCTTTTAGTTTTCCAAAGCAATGCAGCATCTCAGATCAGTCCCATGTTGTGCCCTCAGTGACAAGTTTAGCCACCTCCAATGCCCCATCCACTTTTCATCCTTCTATTAAGGATACACTCTACAACAACATGCCGCAACTGTTTATGGATGCACCAAAGATTGGAAAGAACCCTTCTTCAGACTTGTCTTGA 879 0.4346 MAGDMHQPQSSLGRTFPPNSEDFSTFFNQLLHNPPTPGMDPNHSASDFTPNNLNNNNPVPSSPSTFHFSQPHHYIPATDANTFKQHNNNHNPDFTSSSEKSVEATKPVPPPRSSSKRSRAAEFHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMMRNGLSLHPMSLPGELRPVIMPQTGLNLDESDGLQNSTSAIASSSNEESLVRHAFSFPKQCSISDQSHVVPSVTSLATSNAPSTFHPSIKDTLYNNMPQLFMDAPKIGKNPSSDLS 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00714 292 MobiDBLite consensus disorder prediction 80 103 - -
Vian7g00714 292 MobiDBLite consensus disorder prediction 39 71 - -
Vian7g00714 292 Gene3D - 114 178 IPR036638 GO:0046983
Vian7g00714 292 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 116 179 IPR036638 GO:0046983
Vian7g00714 292 SMART finulus 125 174 IPR011598 GO:0046983
Vian7g00714 292 MobiDBLite consensus disorder prediction 1 132 - -
Vian7g00714 292 MobiDBLite consensus disorder prediction 8 32 - -
Vian7g00714 292 CDD bHLH_AtPIF_like 119 181 IPR047265 -
Vian7g00714 292 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 119 168 IPR011598 GO:0046983
Vian7g00714 292 Pfam Helix-loop-helix DNA-binding domain 123 169 IPR011598 GO:0046983
Vian7g00714 292 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 18 275 IPR031066 -
Vian7g00714 292 MobiDBLite consensus disorder prediction 117 132 - -
Vian7g00714 292 FunFam Basic helix-loop-helix transcription factor 114 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00714 Vian-Chr7 15377740 15380842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00714 118 227 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 68.468 3.23e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian7g00714 HLH 3.4e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00714 7 15377740 15380842 Vian7g00714 7 15377740 15380842 ECH