Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00713 ATGCAAGGGCAGAGAGGTACAATTGGTTCCTTGCAAGAAACCATAGAATTTGATACATCAAGTACTGCTGCAGTTGATCAACATATTTTCTGGAACAATATGCGAAATCCCGCAGAAAACCATTTTGCACTTCCCCCCAGTGATTTGAACCCGTCTTACGCAAATCCTATAAACCATGAATGGCAGAACCTAAGTGGATGGAGCTTAGGTGAGCCAAGTTCCAGCAATACTCAGAATGAGGTTACTAACAATGAGCAGAAAGGAGAGCTAGGATTATCATCTTCAATAAGTTCTGGTGCTATAGCTGGTCCAAGACTTGAAGAAAGGCGCTTTGAACCAAACAATACTTTTCCGTTGGACAATGTCAATACAAGTTCCATGTATATGCGCAGCTCCAATTCTCACTTGGTGCCTCAGAATCTCAACCTAAATGCAAGCTTAGCAGATAGTGGCACTGATAATGGCTTTCGTGTGGAACATCCTCCTAACTTGAACAAGTCTAGTGGACCGGTAAACGAGCATATTCAACCTTCAATTGGTTCTAGTCCGTTTCTGCTTCCTTCTGGCACTAATGGCTTTTTGGTTGAGGATACTGATGGTAGGCCTGGTTGTTCGCTGGACACACGCCGTGTATCATGTAAAAGAAAGGCTGTTGAACGAAGTGTAGGGCAATCTTCAGGTGGTGGAAGTTCTAGCTATAGTCAGCATACAGATGGTAATACTTGGAACACTCTTCCTACTCAGGATTATGTAGGAAGCAGTTTTAACAGATCTGCCTCAACAGAACAGGTGAATGCGAGACTCGGTCTGAGTACTGGGGATGGAGCCGCTGAGAGCATTCCTTGGTCAAATGTTGCAGGAAGCTCAGAAAGCTTCCACAGAAATTTTCGTGTGAGGATAAATCCTTCAAGTCAACAAATTTCGGTTCCACCCCCTGCAATCTCAAGTGGGAGTGTTCTTAGGAATTCTGGTGTCTCTTCGTCCTCTCCAATGTTGCAACGGTTTCATTCTGTTGATAATTCTCTGGACTTGAGGTCAGCACCACCTGTCGTTGATACTATGGTTCCCCAAAGCCAGCCACTTGTTATTCATGTTCCAGCTTTACCAAGGAATGTGCAGCCATTCAGGTGGAATGGAGGTTCCAGCTCAGCCAACAATCATCCTTCAAACACAGTCATATGTGCAGATAGAAATAATTTGCCAAACGAGGAAGCAAGTTCAAGAAGTGTGCCGAGAAACATTGTAGAATACCCTATGTTTGTGCCTGCAACCAATTTAAGAAATGTGGTTAGAAATCCCGCTAGAGCTTCAAATAGTGCAAATTTAAGTATCCCAGGAAATGTTGGTTCTTCATCGAGGGCAGGCTCAAATTCAGCTGTCAACCCTCCGTCTGCTCCGGCGTGGGTTTCTCGCCCTAATCCTCAGCAGTATCCTCGCAGGTTATCCGAGTATGTTCGTCGGTCCTTGTTTTCTCCTGGTTTGGAAGCTGCTGGAAGTTCAAGCAACAATTATGCTTCCTTCCGTGGCCCATCTACTTCATCTGGGGTAAACCCATTTGAGAGGCAAGGTGATAGTGAATTTGGAATTCAGTATTCATTACGATCTTTGGCTGCTGGTGGTGAAGGAAGTAGTAGACTTGTATCTGAGCTCCGCAATGTATTGGGCCTCATGCGTAGGGGTGGGAACCTACGATTTGAGGATGTTATGATCCTCGACCATTCAGTGTTCGCTGGAATTGCTGATATGCATGATCGACACAGGGATATGCGACTTGATGTTGATAACATGTCTTACGAGGAGCTACTTGCTTTGGAAGAACGCATTGGAAATGTGAGCACTGGCTTGAGTGAGGAGACCGTATTGAAACACATGAAAAATAAGAAGTATTCAGCTGAACCAGGTTCTCAGCAGGAGGCAGAACCATGTTGTGTTTGTCAGGAGGAGTACAAAGATGGAGATGATTTAGGATCACTGGATTGTGGGCATGATTACCATACCGAATGTATTAAGCAGTGGCTAATGCATAAGAATTTGTGTCCCATTTGTAAGACAACAGGGTTGGCAACATGA 2070 0.4459 MQGQRGTIGSLQETIEFDTSSTAAVDQHIFWNNMRNPAENHFALPPSDLNPSYANPINHEWQNLSGWSLGEPSSSNTQNEVTNNEQKGELGLSSSISSGAIAGPRLEERRFEPNNTFPLDNVNTSSMYMRSSNSHLVPQNLNLNASLADSGTDNGFRVEHPPNLNKSSGPVNEHIQPSIGSSPFLLPSGTNGFLVEDTDGRPGCSLDTRRVSCKRKAVERSVGQSSGGGSSSYSQHTDGNTWNTLPTQDYVGSSFNRSASTEQVNARLGLSTGDGAAESIPWSNVAGSSESFHRNFRVRINPSSQQISVPPPAISSGSVLRNSGVSSSSPMLQRFHSVDNSLDLRSAPPVVDTMVPQSQPLVIHVPALPRNVQPFRWNGGSSSANNHPSNTVICADRNNLPNEEASSRSVPRNIVEYPMFVPATNLRNVVRNPARASNSANLSIPGNVGSSSRAGSNSAVNPPSAPAWVSRPNPQQYPRRLSEYVRRSLFSPGLEAAGSSSNNYASFRGPSTSSGVNPFERQGDSEFGIQYSLRSLAAGGEGSSRLVSELRNVLGLMRRGGNLRFEDVMILDHSVFAGIADMHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETVLKHMKNKKYSAEPGSQQEAEPCCVCQEEYKDGDDLGSLDCGHDYHTECIKQWLMHKNLCPICKTTGLAT 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00713 689 Pfam Ring finger domain 642 683 IPR001841 -
Vian7g00713 689 ProSiteProfiles Zinc finger RING-type profile. 642 683 IPR001841 -
Vian7g00713 689 MobiDBLite consensus disorder prediction 223 245 - -
Vian7g00713 689 MobiDBLite consensus disorder prediction 64 97 - -
Vian7g00713 689 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 135 687 IPR045191 GO:0061630
Vian7g00713 689 SMART ring_2 642 682 IPR001841 -
Vian7g00713 689 SUPERFAMILY RING/U-box 633 685 - -
Vian7g00713 689 FunFam E3 ubiquitin-protein ligase MBR2 610 687 - -
Vian7g00713 689 MobiDBLite consensus disorder prediction 215 245 - -
Vian7g00713 689 MobiDBLite consensus disorder prediction 437 464 - -
Vian7g00713 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 606 686 IPR013083 -
Vian7g00713 689 MobiDBLite consensus disorder prediction 495 517 - -
Vian7g00713 689 MobiDBLite consensus disorder prediction 145 174 - -
Vian7g00713 689 MobiDBLite consensus disorder prediction 437 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00713 Vian-Chr7 15365149 15368523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00713 1 689 C3H Transcription Factor Family AT2G15530 34.270 7.31e-88 288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00713 7 15365149 15368523 Vian7g00713 7 15365149 15368523 ECH
Vian7g00713 7 15365149 15368523 Vian4g02243 4 39282535 39287521 PCT