Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00711 ATGGCGCAGATTCAGGCACAGCAGCATCAAGGTCCAGTTTCGGCTCCGCCAAACGGCGTCGTACCGGCGCCGAACGCGAACCAGTTTGTGACTACGTCGCTGTACGTAGGCGATCTTGACCAGAATGTCAACGACTCGCAACTCTATGATCTGTTCAGTCAGGTCGGACAAGTCGTATCGGTTCGTGTCTGCAGGGACTTGACCACGCGTCGTTCACTCGGCTATGGCTATGTCAATTACAGTAACCCTACAGATGCGGCGAGGGCATTGGATGTGCTGAATTTCACTCCCCTGAACAGCAAATCGATTAGGATCATGTATTCTCATCGGGATCCTAGTATTAGGAAGAGTGGTACTGCGAATATTTTTATCAAGAATTTGGATAAGGCTATTGACCACAAGGCCTTACATGATACTTTTTCTTCTTTTGGACACATTCTTTCTTGCAAAATAGCAACTGATGGGTCTGGCCTGTCTAAAGGTTATGGTTTTGTTCAATTTGACAATGAAGAGTCTGCACAGAATGCTATTGACAAGTTAAATGGCATGCTGATCAATGATAAGCAGGTCTATGTAGATTCAACCACAGATGAAGAGTTGAAGAAAATTTTTGGTGAACATGGTACCATTACTAGTGCTGTAGTAATGAGAGATGCGGATGGTAAATCTAAGTGTTTTGGTTTCGTCAATTTTGAAAACCCAGACGATGCTGCCAAAGCTGTTGAGGGGCTTAATGGGAAGAAATTTGATGAGAAGGAGTGGTATGTTGGAAAAGCCCAGAAAAAATCTGAGCGTGAACTTGAATTGAAAGGAAGGTTTGAGCAGAGTATCAAGGAAGCTGCTGACAAATTTCAGGGTGTCAACTTGTATCTCAAGAACTTGGATGATACTCTTAGTGATGAAAATCTTAAAGAAATGTTTTCTGAGTTTGGTACAATAACTTCATACAAGGTAATGCGAGACCCGAATGGAATTAGTAGAGGATCTGGATTTGTTGCATTTTCAACTCCTGAAGAAGCATCTCGGGCTCTTGCTGAGATGAATGGTAAAATGATTGCTGGAAAGCCTCTCTACGTTGCCCTGGCACAGAGAAAAGAAGAGAGAAGAGCAAGGTTACAGGCACAGTTTTCACAGATGAGGCCTGTTGCAATTTCGCCATCTGTTGGACCTCGAATGCCTCTCTATCCTCCTGGTGCTCCTGGACTAGGACAACAATTTTTGTATGGTCAAGGACCACCAGCCATGATTCCTCCCCAAGCTGGATTTGGTTACCAGCAGCAGCTAGTTCCTGGAATGAGGCCTGGTGGCGGTCCTATGCCTAGCTTCTTTGTTCCTCTGGTTCAGCAGGGGCAGCAAGGACAGCGCCCAGGTGGTCGCCGAGGAGCTGGTCCTGTGCAACAACCTCAACAGCCAGTGCCAATGATGCAGCAGCAGATGCTTCCAAGGGGACGAGTCTATCGTTACCCTCCTGGCCGCAACATGCAAGATGTCCCACTTCCAGGTGTAGCTGGTGGGATGATGTCTGTCCAGTATGACATGGGTGGCTTGCCAATCCGCGATGCTGTGGGACAGCCAATGCCTATTCAAGCTCTGGCTACGGCCCTTGCAAATGCCCCACCTGAGCAGCAGAGGACTATGCTGGGTGAAGCTTTATACCCGCTGGTGGATCAGCTGGAACATGATGCAGCAGCAAAGGTTACTGGCATGCTTTTGGAGATGGACCAGCCTGAAGTGCTACATCTGATCGAGTCACCGGATGCTCTGAAGGCGAAAGTTGCTGAAGCCATGGATGTGTTGAGAAATGTTGCTCAGCAGCAAACCAACCCTGCTGATCAACTAGCTTCACTCTCTCTCAATGACAATCTTGTCCCTTAG 1875 0.4741 MAQIQAQQHQGPVSAPPNGVVPAPNANQFVTTSLYVGDLDQNVNDSQLYDLFSQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPTDAARALDVLNFTPLNSKSIRIMYSHRDPSIRKSGTANIFIKNLDKAIDHKALHDTFSSFGHILSCKIATDGSGLSKGYGFVQFDNEESAQNAIDKLNGMLINDKQVYVDSTTDEELKKIFGEHGTITSAVVMRDADGKSKCFGFVNFENPDDAAKAVEGLNGKKFDEKEWYVGKAQKKSERELELKGRFEQSIKEAADKFQGVNLYLKNLDDTLSDENLKEMFSEFGTITSYKVMRDPNGISRGSGFVAFSTPEEASRALAEMNGKMIAGKPLYVALAQRKEERRARLQAQFSQMRPVAISPSVGPRMPLYPPGAPGLGQQFLYGQGPPAMIPPQAGFGYQQQLVPGMRPGGGPMPSFFVPLVQQGQQGQRPGGRRGAGPVQQPQQPVPMMQQQMLPRGRVYRYPPGRNMQDVPLPGVAGGMMSVQYDMGGLPIRDAVGQPMPIQALATALANAPPEQQRTMLGEALYPLVDQLEHDAAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLRNVAQQQTNPADQLASLSLNDNLVP 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00711 624 SUPERFAMILY RNA-binding domain, RBD 194 368 IPR035979 GO:0003676
Vian7g00711 624 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 261 IPR000504 GO:0003723
Vian7g00711 624 CDD RRM2_I_PABPs 118 192 IPR045305 -
Vian7g00711 624 Pfam Poly-adenylate binding protein, unique domain 535 599 IPR002004 GO:0003723
Vian7g00711 624 MobiDBLite consensus disorder prediction 449 471 - -
Vian7g00711 624 Gene3D - 194 283 IPR012677 -
Vian7g00711 624 Gene3D - 284 385 IPR012677 -
Vian7g00711 624 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 287 364 IPR000504 GO:0003723
Vian7g00711 624 PANTHER RNA BINDING PROTEIN 31 94 - -
Vian7g00711 624 SMART rrm1_1 194 257 IPR000504 GO:0003723
Vian7g00711 624 SMART rrm1_1 33 106 IPR000504 GO:0003723
Vian7g00711 624 SMART rrm1_1 121 193 IPR000504 GO:0003723
Vian7g00711 624 SMART rrm1_1 288 360 IPR000504 GO:0003723
Vian7g00711 624 SMART rrm2_1 121 193 IPR003954 GO:0003676
Vian7g00711 624 SMART rrm2_1 288 360 IPR003954 GO:0003676
Vian7g00711 624 SMART rrm2_1 33 106 IPR003954 GO:0003676
Vian7g00711 624 FunFam Polyadenylate-binding protein 121 193 - -
Vian7g00711 624 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
Vian7g00711 624 MobiDBLite consensus disorder prediction 1 22 - -
Vian7g00711 624 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 289 357 IPR000504 GO:0003723
Vian7g00711 624 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 104 IPR000504 GO:0003723
Vian7g00711 624 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 190 IPR000504 GO:0003723
Vian7g00711 624 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 254 IPR000504 GO:0003723
Vian7g00711 624 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 197 IPR000504 GO:0003723
Vian7g00711 624 FunFam Polyadenylate-binding protein 523 605 - -
Vian7g00711 624 Gene3D - 1 119 IPR012677 -
Vian7g00711 624 FunFam Polyadenylate-binding protein 194 269 - -
Vian7g00711 624 FunFam Polyadenylate-binding protein 270 375 - -
Vian7g00711 624 FunFam Polyadenylate-binding protein 19 120 - -
Vian7g00711 624 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 527 604 IPR002004 GO:0003723
Vian7g00711 624 CDD RRM1_I_PABPs 33 112 IPR034364 -
Vian7g00711 624 Gene3D - 120 193 IPR012677 -
Vian7g00711 624 CDD RRM4_I_PABPs 286 364 - -
Vian7g00711 624 Gene3D - 523 606 - -
Vian7g00711 624 SUPERFAMILY RNA-binding domain, RBD 32 193 IPR035979 GO:0003676
Vian7g00711 624 SUPERFAMILY PABC (PABP) domain 469 615 IPR036053 GO:0003723
Vian7g00711 624 CDD RRM3_I_PABPs 190 262 - -
Vian7g00711 624 SMART poly_2 539 602 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00711 Vian-Chr7 15333381 15337506 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00711 31 624 Eukaryotic Initiation Factors Gene Family AT1G49760 68.720 0.0 813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00711 7 15333381 15337506 Vian7g00711 7 15333381 15337506 ECH