Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00693 ATGTCTCACCATTACCCAAAACCCCTTCTAGACACCCTATTCTGCTTAGAGGACAACATTCATTTGGAGGAAGAAAAACAAAGAGAAGAAGATGATTACATCGGCACAACCTCAAAACCGAACTCCTCCGATGTGGTCCTTTCAGAACAAGACCTCTTCTGGGACACCCAGGAGCTCTCTTCTCTTCTCGCCAAAGAAAACCTTAACAGCCTTTCCATCTCTCTCCCAAACAACCCTTCTCTGGCTTCTTCTCGCGGAGAAGCCGTGGACTGGATTCTCAAACTGAATCTTCACCATTCCTTTTCTACCCTCACAGCACTTCTCGCAGTTAACTACCTCGACAGGTTCCTCTTCACCCTCAGATTCCAGAACGACAAGCCGTGGCTCACGCAACTCGTTGCAGTGGCGTGCCTCTCTCTTGCAGCCAAAGTTGAAGAGACCCACGTGCCCCTTTTCGTGGACCTCCAAGTGGGGGAGAGTAAGTACCTTTTTGAAGCGAAAACGGTTAAGAGAATGGAAATCTTGGTCCTTTCCACACTCGGATGGAAGATGAACCCGGTAACACCTCTCTCGTTCCTTGATTACATCACGAGAAAACTCGGCTTAAAGGGTCATCTCTGCTTGGAGTTTCTCAGAAGATGTGAAACCGTTCTTCTCTCTGTCTTTGCAGAGTCGAGATTTATGAGTTTTCTTCCTTCTGTGTTGGCAACTGCGACGACGTTGCGCGTGGTGAGTGTTGTGGAGCCTGGTTTGGGAGAGGAATACCAAGATCAGCTCTTGGGTATTCTCGGAATCGACAAGGAGAAGGTGAAAGAATGCTACAAGGTGATGATGGAGATTGTGTCAGGGAAGAGTGAAGAGGGTAAAAGAGGGAATTTGAAGAAAAGGAAGTTTGAGTGCATTCAGTGTAGCCGAAACGACGTGATGGAAGGGTCGTTTAGCTGTGATAGTTCGTGTGATTCTTGGGAGTTAGGTGCGTCATTGAAGAAAAGTAGGAGCCAAGATCAGCTTCTATTGAAGCATTCAAACTCAGATTTTCTCACCATTCCTCGCTAG 1056 0.4725 MSHHYPKPLLDTLFCLEDNIHLEEEKQREEDDYIGTTSKPNSSDVVLSEQDLFWDTQELSSLLAKENLNSLSISLPNNPSLASSRGEAVDWILKLNLHHSFSTLTALLAVNYLDRFLFTLRFQNDKPWLTQLVAVACLSLAAKVEETHVPLFVDLQVGESKYLFEAKTVKRMEILVLSTLGWKMNPVTPLSFLDYITRKLGLKGHLCLEFLRRCETVLLSVFAESRFMSFLPSVLATATTLRVVSVVEPGLGEEYQDQLLGILGIDKEKVKECYKVMMEIVSGKSEEGKRGNLKKRKFECIQCSRNDVMEGSFSCDSSCDSWELGASLKKSRSQDQLLLKHSNSDFLTIPR 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00693 351 CDD CYCLIN_AtCycD-like_rpt2 187 277 - -
Vian7g00693 351 FunFam D6-type cyclin 69 185 - -
Vian7g00693 351 SMART Cyclin_C_2 187 307 IPR004367 -
Vian7g00693 351 SUPERFAMILY Cyclin-like 58 185 IPR036915 -
Vian7g00693 351 CDD CYCLIN_AtCycD-like_rpt1 85 182 - -
Vian7g00693 351 Gene3D - 81 185 - -
Vian7g00693 351 Pfam Cyclin, N-terminal domain 78 185 IPR006671 -
Vian7g00693 351 PANTHER CYCLINS 31 284 IPR039361 -
Vian7g00693 351 SUPERFAMILY Cyclin-like 188 286 IPR036915 -
Vian7g00693 351 SMART cyclin_7 90 178 IPR013763 -
Vian7g00693 351 Gene3D - 186 275 - -
Vian7g00693 351 FunFam CYCLIN D32 186 275 - -
Vian7g00693 351 ProSitePatterns Cyclins signature. 85 116 IPR006671 -
Vian7g00693 351 Pfam Cyclin, C-terminal domain 187 287 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00693 Vian-Chr7 15116639 15118206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00693 9 280 Core Cell Cycle Gene Families AT4G34160 49.265 6.16e-87 265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00693 7 15116639 15118206 Vian10g00558 10 5261793 5263097 ECH
Vian7g00693 7 15116639 15118206 Vian1g01628 1 18525532 18526990 ECH
Vian7g00693 7 15116639 15118206 Vian3g00356 3 3426713 3428349 ECH
Vian7g00693 7 15116639 15118206 Vian7g00693 7 15116639 15118206 ECH
Vian7g00693 7 15116639 15118206 Vian4g02225 4 39054106 39058697 PCT