Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00690 ATGGCAACCGGAAGCAGAGACATGGATCGGATCAAGGGCCCATGGAGCCCGGAGGAGGACGAGGCGCTGCAGAGGTTGGTGCAGGCTCTTGGGCCGAGAAACTGGACGATGATAAGCAAGTCTATTCCTGGTCGATCCGGCAAATCGTGCCGGCTACGATGGTGCAACCAGCTTTCGCCGGAAGTGGAGCACCGCGCTTTCACGCCGGAAGAGGACGATGTTATTGTCAGGGCGCACAGTAGGTTCGGTAATAAGTGGGCCACCATAGCACGTTTACTCAATAGCCGCACTGATAACGCCGTCAAAAATCACTGGAACTCCACTCTCAAGAGAAAATGCTCCGCCCTTGGTCTCGATGCAACGGATCGTTCACCCCTAAAAAGATCTGCCAGTGTCAGCGCGGGTTATTTAAACCCGAGCAGTCCATCTGGGTCCGATTTAAGCGATCCGGGCAAGCCGGCTCTGTCGACTCCTTCTGCCTCGGCCTTCTGCAGGCCCAATCTCATGGAAGCCGCTTCTTCACTCTCCGATCCAGCCACGTCACTGAGTTTATGTCTTCCTGGGTTAAACTCGGAATCTATACAGCGGAGTTTATGTCTTCCTGGGTTAAGCTCGGAGCCTGTACAGCGGCCAGCATCTCCGGCACAGCCTTCTCCACCTCCTCCTCCTTCAGCGGTGTCCACGGTGGAAGAGCGTAGAAAGCAATTGTTCAATCCGGAGTTTTTGAGGGTGATGCAAGAAATGATAAGGAAGGAAGTGAGGAGTTACATGTCAGGGATGGAGGTGAAGAATGGTTTGAGAATACAGACGGAAGTCATTGGAAAAGCGGTGGTGAAGCGCATGGGAATCAGCAACATCAAGTGA 864 0.5359 MATGSRDMDRIKGPWSPEEDEALQRLVQALGPRNWTMISKSIPGRSGKSCRLRWCNQLSPEVEHRAFTPEEDDVIVRAHSRFGNKWATIARLLNSRTDNAVKNHWNSTLKRKCSALGLDATDRSPLKRSASVSAGYLNPSSPSGSDLSDPGKPALSTPSASAFCRPNLMEAASSLSDPATSLSLCLPGLNSESIQRSLCLPGLSSEPVQRPASPAQPSPPPPPSAVSTVEERRKQLFNPEFLRVMQEMIRKEVRSYMSGMEVKNGLRIQTEVIGKAVVKRMGISNIK 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00690 287 PANTHER MYB PROTEIN-RELATED 12 204 - -
Vian7g00690 287 Pfam Myb-like DNA-binding domain 66 108 IPR001005 -
Vian7g00690 287 Pfam Myb-like DNA-binding domain 12 58 IPR001005 -
Vian7g00690 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Vian7g00690 287 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Vian7g00690 287 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Vian7g00690 287 MobiDBLite consensus disorder prediction 202 228 - -
Vian7g00690 287 Gene3D - 11 63 - -
Vian7g00690 287 CDD SANT 14 56 IPR001005 -
Vian7g00690 287 Gene3D - 65 131 - -
Vian7g00690 287 MobiDBLite consensus disorder prediction 212 226 - -
Vian7g00690 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 113 IPR017930 -
Vian7g00690 287 FunFam MYB transcription factor 12 63 - -
Vian7g00690 287 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Vian7g00690 287 CDD SANT 66 109 IPR001005 -
Vian7g00690 287 SMART sant 11 60 IPR001005 -
Vian7g00690 287 SMART sant 63 111 IPR001005 -
Vian7g00690 287 MobiDBLite consensus disorder prediction 127 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00690 Vian-Chr7 15068329 15069192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00690 6 264 MYB Transcription Factor Family AT4G37260 52.482 2.86e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian7g00690 Myb_DNA-binding 2.4e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00690 7 15068329 15069192 Vian10g00554 10 5232948 5233847 ECH
Vian7g00690 7 15068329 15069192 Vian1g01625 1 18439408 18440274 ECH
Vian7g00690 7 15068329 15069192 Vian7g00690 7 15068329 15069192 ECH