Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00668 ATGGGAACCGAGAGTTACACTTACCTAGGACGCAATTTCAGCCAACTCAGCATCAACGACGCTTCCTCTTCCTCCGCCTTCAGCGACTGCAACAGTGACAGATCTGGCGAATTCGCCACCGCTTCTTCGCAAACGCGCCGCTTTCTCATCACCTGCGCCACCGAAAACTCCGACGATTTGATCCGTCAACTCGTCGCCGATCTTCACTCCGCCTCACTCGACGATCAGAAGCAAGCCGCCATGGAAATCAGATTGCTCGCCAAAAACAAGCCGGAGAATCGAGTCAAAATAGCCAAAGCCGGCGCAATCAAACCGCTGATTTCACTCATTTCTTCGCCGGACCTCCAGCTCCAGGAATACGGCGTCACCGCGATTTTGAATCTCTCGCTCTGCGACGAGAACAAGGAGGCCATCGCCTCCGCAGGAGCGATTAAGCCGCTGGTTCGCGCGCTGAGCACGGGAACCGCGACGGCAAAGGAGAACTCAGCGTGCGCGCTGCTGCGGCTGTCGCAGGTGGAGGAGAACAAGGCGGCGATTGGGCGGTCCGGCGCGATTCCGCCGCTGGTGAGCCTTCTGGCGAGCGGCGGGTTCCGCGCGAAGAAGGACGCGTCGACGGCGCTGTACTCGCTGTGCACGGTGAAGGAGAACAAGCTTAGGGCGGTGAAGGCGGGGATCATGAAGGTGCTGGTGGAGCTGATGGCGGACTTCGAGTCGAACATGGTGGACAAGTCGGCGTACGTGGTGAGCGTGCTGGTGTCAGTGCCGGAGGCGAGGGCGGCGCTGGTGGAGGAAGGCGGCGTGCCCGTGCTGGTTGAGATCGTTGAGGTGGGAACGCAGAGGCAGAAGGAAATCGCGGTTGTTATTCTGTTGCAGGTGTGTGAAGATAGCGTGGCGTATCGCTCTAGGGTGGCTCGCGAAGGTGCGATTCCTCCTTTGGTGGCTCTGTCTCAGTCCGGCACCAATCGCGCCAAGCAAAAGGCGGAGAAATTAATTGAGCTTCTGCGGCAACCAAGATCCTGCAACGGCGGTGGTCTTGCGTCAGAAGTGGCGGTGTAA 1056 0.5919 MGTESYTYLGRNFSQLSINDASSSSAFSDCNSDRSGEFATASSQTRRFLITCATENSDDLIRQLVADLHSASLDDQKQAAMEIRLLAKNKPENRVKIAKAGAIKPLISLISSPDLQLQEYGVTAILNLSLCDENKEAIASAGAIKPLVRALSTGTATAKENSACALLRLSQVEENKAAIGRSGAIPPLVSLLASGGFRAKKDASTALYSLCTVKENKLRAVKAGIMKVLVELMADFESNMVDKSAYVVSVLVSVPEARAALVEEGGVPVLVEIVEVGTQRQKEIAVVILLQVCEDSVAYRSRVAREGAIPPLVALSQSGTNRAKQKAEKLIELLRQPRSCNGGGLASEVAV 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00668 351 SUPERFAMILY ARM repeat 58 331 IPR016024 -
Vian7g00668 351 Gene3D - 32 198 IPR011989 -
Vian7g00668 351 SMART arm_5 90 130 IPR000225 GO:0005515
Vian7g00668 351 SMART arm_5 254 294 IPR000225 GO:0005515
Vian7g00668 351 SMART arm_5 172 212 IPR000225 GO:0005515
Vian7g00668 351 SMART arm_5 213 253 IPR000225 GO:0005515
Vian7g00668 351 SMART arm_5 131 171 IPR000225 GO:0005515
Vian7g00668 351 FunFam RING-type E3 ubiquitin transferase 50 340 - -
Vian7g00668 351 Gene3D - 199 337 IPR011989 -
Vian7g00668 351 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 183 225 IPR000225 GO:0005515
Vian7g00668 351 PANTHER U BOX DOMAIN-CONTAINING 60 335 - -
Vian7g00668 351 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 101 143 IPR000225 GO:0005515
Vian7g00668 351 Pfam Armadillo/beta-catenin-like repeat 132 170 IPR000225 GO:0005515
Vian7g00668 351 Pfam Armadillo/beta-catenin-like repeat 174 211 IPR000225 GO:0005515
Vian7g00668 351 Pfam Armadillo/beta-catenin-like repeat 91 129 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00668 Vian-Chr7 14777257 14778760 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00668 42 343 U-box Gene Family AT2G23140 49.669 2.66e-88 276