Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00190 ATGCTCCTTGAAGACTTTCAAATAGTGAAGCCAGAGTCAGAGCACTGTGAAGTGAGAGCAGAGCACTCTCCTGTGAGTTGCAAATCCACCATTGAGCCATGCTCTGATAGTAACTCCTGCAATGCTCTTCTTGGCTACACCCTTTACACTGAGCTCAAGGTCTCTGAGGTTGCTTCTCTCTTCCAAATAGACCCTATTGCTCTTCTCACTGCCAATGCCTTTGACATATCCTACTCTGATGTAGAGCATCACATTCTCCCTTGCAAACTCTTCCTCAAGGTCCCTATCACATGTTCCTGTGCTGATGGAATTAGAAAATCAGTGTCTGCCCATTACAGGACTCGTCCTTCTGATACTCTCTCTTCCATTGCAGATTCAGTGTATGGAGGTCTGGTGTCTCCTGATCAGCTTAGGGAGGCTAATTCCATAGCTGATCCTTTGATGCTTGATGTGGGTCACAACCTTGTGGTGCCACTTCCATGCACATGCTTCAATGGCAGTGATAATTCTTTGCCTTCAGTTTACCTCTCCTATGTGGTAAAGCCAATGGATACTTTGGCTGCCATTGCAGCTAGGTATTTCACCACACTTACTGATTTGATGAATGTCAATGACATGGGGAGTGCAGCTATCTCTGATGGAGATATTCTTGCTGTTCCAATTCCTGCTTGTGCATCAAAATTTCCAAAACATGCCACTGATTTTGGCTTGCTTGTCCCTAATGGAAGCTACACCATTACAGCTAGTCACTGTGTGCAGTGTAGCTGTGGACCACAGAATTTAGATTTAAACTGTATTCCCTCTTCTCTAGCCGTCTCTTGCTCCAGCATGCAATGCAAAAGAAGCAATTTTACACTTGGGAATGTTACCGTGCAAAAGATGAGCTCAGGTTGTAATGTGACATCGTGCAATTATGATGGTTTTGTCAATGGCAACATATTAACAATGATGGCCTCTTCTCTTCAGCCTCATTGTCCAGGTTAG 984 0.4441 MLLEDFQIVKPESEHCEVRAEHSPVSCKSTIEPCSDSNSCNALLGYTLYTELKVSEVASLFQIDPIALLTANAFDISYSDVEHHILPCKLFLKVPITCSCADGIRKSVSAHYRTRPSDTLSSIADSVYGGLVSPDQLREANSIADPLMLDVGHNLVVPLPCTCFNGSDNSLPSVYLSYVVKPMDTLAAIAARYFTTLTDLMNVNDMGSAAISDGDILAVPIPACASKFPKHATDFGLLVPNGSYTITASHCVQCSCGPQNLDLNCIPSSLAVSCSSMQCKRSNFTLGNVTVQKMSSGCNVTSCNYDGFVNGNILTMMASSLQPHCPG 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00190 327 ProSiteProfiles LysM domain profile. 110 157 IPR018392 -
Vian7g00190 327 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 28 327 - -
Vian7g00190 327 SMART LysM_2 177 220 IPR018392 -
Vian7g00190 327 SMART LysM_2 111 158 IPR018392 -
Vian7g00190 327 Pfam LysM domain 178 220 IPR018392 -
Vian7g00190 327 Pfam LysM domain 112 158 IPR018392 -
Vian7g00190 327 CDD LysM 111 157 IPR018392 -
Vian7g00190 327 Gene3D LysM domain 108 166 IPR036779 -
Vian7g00190 327 Gene3D LysM domain 167 227 IPR036779 -
Vian7g00190 327 SUPERFAMILY LysM domain 176 221 IPR036779 -
Vian7g00190 327 CDD LysM 177 219 IPR018392 -
Vian7g00190 327 ProSiteProfiles LysM domain profile. 176 219 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00190 Vian-Chr7 6154344 6159442 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00190 26 327 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 71.854 1.23e-163 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00190 - - pvu:PHAVU_008G163700g 573.163