Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01805 ATGGGGTTGAGTTCTAAGCAGGTTTCTAATAGAGGGCTTGATTGGGACCAGACTTTGTTGCAGGCTCAAAACTTGGAGCTCCCAAAGCCTACTCCTATGAGGAAACAGCAGCAACAGACTCAGCCATCAGAGCCTTTGAATTGTCCAAGATGTGACTCCATTAACACCAAATTCTGTTACTACAACAACTACAACAAGTCTCAACCCCGCCATTTCTGCAGAGCTTGCAAGAGGCACTGGACTAAAGGTGGAACTCTGCGCAACGTTCCTGTTGGCGGTGGTAGAAAGAATAAGCGAGCCAAGAAATCGACCACAGCTACAACCACCACCTCAAATGGAAGCATGGATGGTGAGTTGAGAACCCGCGTTACAATTCCTCCTCTTGCAGTGGATGATCATCACAAAACCACACCTTCCTCTCTCTACCAATCTCTGTGCCTGCCACAACAGAATCCGAATACCAAAGTTTCCCAAGGCAAGGACTTTGGTATTGGCAATGGAATCTTTCTGAGTTCAAACGTGCCTTTTCCTCAAAACCAAAGCCTTCTCTTCCCTTTCACAACCTCAAACTCCTTTGACACAAACACGTGTGCAGTATCCAACTCTCTGCAATCCTCCAGTGTGTATAACTACGGTGACGAGTTTAAAATACTGGAAGAGCCAACCGTGAACAGTACAATGGCCTGCACTGGTGCTGGCACCAGGACACAACCATGGGAGATCGCAGCGACAAGTTCTGGTTTGGAAATGTCAAACTATTGGAGTTGGGAGGACATCGATTCGTTGGTCTCAACCGATCCAAATAATCCTTGGGATGATTCCGACATCAAACCCTGA 837 0.4707 MGLSSKQVSNRGLDWDQTLLQAQNLELPKPTPMRKQQQQTQPSEPLNCPRCDSINTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRAKKSTTATTTTSNGSMDGELRTRVTIPPLAVDDHHKTTPSSLYQSLCLPQQNPNTKVSQGKDFGIGNGIFLSSNVPFPQNQSLLFPFTTSNSFDTNTCAVSNSLQSSSVYNYGDEFKILEEPTVNSTMACTGAGTRTQPWEIAATSSGLEMSNYWSWEDIDSLVSTDPNNPWDDSDIKP 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01805 278 MobiDBLite consensus disorder prediction 103 118 - -
Vian6g01805 278 MobiDBLite consensus disorder prediction 84 118 - -
Vian6g01805 278 ProSitePatterns Zinc finger Dof-type signature. 48 84 IPR003851 GO:0003677|GO:0006355
Vian6g01805 278 ProSiteProfiles Zinc finger Dof-type profile. 46 100 IPR003851 GO:0003677|GO:0006355
Vian6g01805 278 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 34 197 IPR045174 GO:0003700|GO:0006355
Vian6g01805 278 Pfam Dof domain, zinc finger 45 99 IPR003851 GO:0003677|GO:0006355
Vian6g01805 278 MobiDBLite consensus disorder prediction 26 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01805 Vian-Chr6 35510530 35511366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01805 29 133 C2C2-Dof Transcription Factor Family AT5G60200 50.000 3.57e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vian6g01805 zf-Dof 1.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01805 - - vra:106774613 520.776