Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00434 ATGTCAGTTGATGATGTTAAGGCTGCTGCTAGTGAGTTCGCTAGGGGATTTAATCACAGTTACTACCACCCGTTGCACATAGCAATACTAAAAGGAGATTGGCAATCTACAAAGGCTTTTCTTGACAATGACCCAAGTGCATGGACTGCGAAGATCACAATACTCGGTAGGACTGCACTGCATGTTGCAGCTGTAGGAGGGCAGTGGCAAATTGTTGAGAAGTTGGTGCAACATGTTCCTACAAAAGTGCTTGAAGAGTTGGACTTGATGGGTTGTACTTGCCTGCACTATGTTGCAATGGGGGAAAGCAGAAGTGCTGCCAAGGCATTGGTCACTAAAAATCCTTCTCTGACACAACTCACTGACTTTAAAGGATTCACACCACTTATCTACAGTATTACCTCTGCTAAATGCAAAGAAATGGTATGGTACTTTGTTTTGAATACTACAGATGAGAGACCTGGTTGTCCTTTCTCTGGTCCTTCTGCTGCTCAACTTGTTGCTTTGCTTACTGCTGCAGGATTTCATGATGTCACTATATATCTTCTTCAGCGCTACCCAGATTTGGCTACTCTCTCAGATTCAAAGGGAAGCATTATACTTAATGTTTTGTCAAAATTGCCTTCGGACTTTCAAAGTATGCCAGATGAACTTGATTTTTTACCACCGAGTCATCTGAGAGGAAATTTGAAGGATTCATTTGGGAATTCAAGCCATTACCAATCTTATTTTGGAAGTACAATATGGGATGGGATTCAGAGTATTGTTCCTGGAATAAAGCTAGTGAGAGAGACAAAGTTGAGACACGCATCTGCTGCGAGATTGGTGGAACTCGTTTGCACACAGGTTTCAAATTTGAATGACACCGAATTCTGGCAGTCTTTTGTGAGTGCAGACATTGTTTTCAATGCCTCATCATCTGGCATAGTTGAAATTTTAAGGATCAGTTTCCAGTTTTTTCCTGATTTGGTTTGGAGTCACTTGCCAAATGAAGGATATGTAGCTCAAACTGCCATCAAGTATCGGCAAGAGAAGGTTTTTAGTCTTGTATGCAATATGCCTATAGTTTGCAAGTTTTTAATCCTGGCATTAGACGAATCACAAAACACCACATCACATCTAGCAGCAAGGTTTGCTTCTCCTCAACAGGCATCAATTTCTGGTGCAGCTTTTCAAATGCAAAAAGAGTTGCAGTGGTTTAAGAAAGTGGAGCAATGGGATCACCCTCTTCATAAAGAAGTTAAAAACATAGATGGTAAAACACCTTGGCAATTGTTCAGGGAAGAGCATAAGCCCTTGCTTGAAGAAGCAAAGGTTTGGATGAAGGATACATCAAACTCTTGTATGTTGGTGGCAACTCTTATTGCCACAGTTGTCTTTGCTGCTTCTATAACTGTACCTGGAGGAAACAACCAAGACAAAGGATTTCCATTATTCTTGTCAGATAACACATTCATGGTGTTCGTTGTGTCAGATACATTAGCTTTGTTTTCCTCCATGGTTTCCCTTTTGATGTTTTTATCAATTCTAACTGCACATTATGCAGAAGAAGATTTTCTCAAGAGATTACCTGAGAGAATAATATTGGGTCTGGCTTCTTTGTTCTTTTCCATAGTAACTACAATGATAGCATTTGGTGCAGCCCTGGATTTGTTGCTAAGGGAGAGAGTGGAATGGGTGTCAATCCCAATTGCTCTTCTGGCATGTGTCCCAGTTGCTCTATTTGTGAGGCTTCAACTTCCCTTGTTCATACAAATGATCATATCAACTTATGGTTCTTCTATATATCATCGTCAAAGTCTTTGGTAA 1809 0.4052 MSVDDVKAAASEFARGFNHSYYHPLHIAILKGDWQSTKAFLDNDPSAWTAKITILGRTALHVAAVGGQWQIVEKLVQHVPTKVLEELDLMGCTCLHYVAMGESRSAAKALVTKNPSLTQLTDFKGFTPLIYSITSAKCKEMVWYFVLNTTDERPGCPFSGPSAAQLVALLTAAGFHDVTIYLLQRYPDLATLSDSKGSIILNVLSKLPSDFQSMPDELDFLPPSHLRGNLKDSFGNSSHYQSYFGSTIWDGIQSIVPGIKLVRETKLRHASAARLVELVCTQVSNLNDTEFWQSFVSADIVFNASSSGIVEILRISFQFFPDLVWSHLPNEGYVAQTAIKYRQEKVFSLVCNMPIVCKFLILALDESQNTTSHLAARFASPQQASISGAAFQMQKELQWFKKVEQWDHPLHKEVKNIDGKTPWQLFREEHKPLLEEAKVWMKDTSNSCMLVATLIATVVFAASITVPGGNNQDKGFPLFLSDNTFMVFVVSDTLALFSSMVSLLMFLSILTAHYAEEDFLKRLPERIILGLASLFFSIVTTMIAFGAALDLLLRERVEWVSIPIALLACVPVALFVRLQLPLFIQMIISTYGSSIYHRQSLW 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00434 602 ProSiteProfiles Ankyrin repeat profile. 55 78 IPR002110 GO:0005515
Vian6g00434 602 Pfam Domain of unknown function 440 549 IPR026961 -
Vian6g00434 602 SUPERFAMILY Ankyrin repeat 24 235 IPR036770 -
Vian6g00434 602 Gene3D - 5 207 IPR036770 -
Vian6g00434 602 ProSiteProfiles Ankyrin repeat region circular profile. 55 78 - -
Vian6g00434 602 PANTHER CASKIN 53 592 - -
Vian6g00434 602 SMART ANK_2a 55 84 IPR002110 GO:0005515
Vian6g00434 602 SMART ANK_2a 90 119 IPR002110 GO:0005515
Vian6g00434 602 SMART ANK_2a 20 51 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00434 Vian-Chr6 18306264 18310519 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00434 396 573 Miscellaneous Gene Families AT3G12360 27.778 3.01e-10 61.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00434 6 18306264 18310519 Vian6g00434 6 18306264 18310519 ECH