Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vian5g01300 | ATGGTTTTCTCCTCTATTCCAGTCTTTGTAGATCCTCCCAATTGGCACCAGCAACCCAACCATCCTCAGGCCAATGGCAGTGACAACACTCAGCTTCTTCCACCTTTGCCACCGCAGCAGACTCATGTGGGAGCTTCTGTGGGATCAATCAGGCCAGGTTCCATGGCTGATCGAGCTAGGCTGGCTAAGATACCTCCTCCTGAAGCGGCTCTCAAGTGTCCACGTTGTGAATCCACCAACACTAAATTTTGCTATTTCAACAACTATAGCCTCTCTCAGCCACGCCACTTCTGCAAGACTTGCCGGCGTTATTGGACAAGAGGGGGTGCTCTAAGAAACGTTCCTGTGGGTGGAGGCTGCCGTAGGAACAAGAAGAACAAAAGGAGTCGCTCTAAGTCTCCAGCATCATCTGACAAACAAACACTGTCTGGTTCTTCTGGTGCACTCCCCTCTGGTGGAAACACTCACGAGCTTATAGGCCAGTTGCCGCAACCACCGAACCTTCCCTTCATGGCATCACTCCAGAACCTGAACCGTTATGCTGTCGGAAACATGGGTCTCGGGTTGCGTGAGATTCACGGACAGAACGATCACATGGGTTTTCAAATTGGTGGCAGCGGTAATTCCTCTACTGGTGGAGGAATGGATCAGTGGCGTTTGCAGCAGATTCCTTTCTTTAATGGTTTTGAATCTGCTTCAGCTGGTTCCTACCATTTTCAAAATGAAAGTATTGAAACACCTTCTGGTTTGGTTGGAGATTTAGCATCGAATTCTAGGGTTTCTCAGATGCCATCAGTTAAAATGGAAGAAAGTGGAGCTTTGAATTTGTCAAGATCACCACTGAACGTCTCAGAAAATAACCACTACTATTCATGGACTGATATGTCAGGTCTTTCCTCTTCTTCTGCTAGTCATCTCTTGTAA | 924 | 0.4762 | MVFSSIPVFVDPPNWHQQPNHPQANGSDNTQLLPPLPPQQTHVGASVGSIRPGSMADRARLAKIPPPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKRSRSKSPASSDKQTLSGSSGALPSGGNTHELIGQLPQPPNLPFMASLQNLNRYAVGNMGLGLREIHGQNDHMGFQIGGSGNSSTGGGMDQWRLQQIPFFNGFESASAGSYHFQNESIETPSGLVGDLASNSRVSQMPSVKMEESGALNLSRSPLNVSENNHYYSWTDMSGLSSSSASHLL | 307 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vian5g01300 | 307 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 49 | 230 | IPR045174 | GO:0003700|GO:0006355 | |
Vian5g01300 | 307 | MobiDBLite | consensus disorder prediction | 16 | 33 | - | - | |
Vian5g01300 | 307 | MobiDBLite | consensus disorder prediction | 115 | 164 | - | - | |
Vian5g01300 | 307 | ProSitePatterns | Zinc finger Dof-type signature. | 73 | 109 | IPR003851 | GO:0003677|GO:0006355 | |
Vian5g01300 | 307 | ProSiteProfiles | Zinc finger Dof-type profile. | 71 | 125 | IPR003851 | GO:0003677|GO:0006355 | |
Vian5g01300 | 307 | MobiDBLite | consensus disorder prediction | 135 | 161 | - | - | |
Vian5g01300 | 307 | MobiDBLite | consensus disorder prediction | 12 | 33 | - | - | |
Vian5g01300 | 307 | Pfam | Dof domain, zinc finger | 70 | 125 | IPR003851 | GO:0003677|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vian5g01300 | Vian-Chr5 | 35728467 | 35729596 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vian5g01300 | 37 | 306 | C2C2-Dof Transcription Factor Family | AT3G55370 | 43.333 | 4.98e-55 | 181 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-Dof | Vian5g01300 | zf-Dof | 1.8e-32 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vian5g01300 | - | - | gmx:100816635 | 502.286 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vian11g00398 | 11 | 3714882 | 3715957 | Vian5g01300 | 5 | 35728467 | 35729596 | PCT |