Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01227 ATGGATCCTTCTACTGGACAACACCAGATGTCTAACCAGTCATTGGAGAACATGTTGGCATGTTCAAAAGCACAGCAGGAGAGGAAGCCAAGGCCTCAGCCAGAACAAGCTCTAAAGTGCCCCAGATGTGACTCCACCAACACCAAATTTTGTTACTACAACAATTACAGCCTTTCCCAGCCAAGGTACTTCTGCAAGTCTTGCAGAAGATATTGGACCAAAGGAGGAACACTGAGGAATGTTCCAGTGGGAGGAGGGTGCAGGAAGAACAAGAGGTCATCATCATCATCTTCATCTTCAAAGAGAATCCAAGATCAAGGATTCACACCCAATCCAAACAACCCTCTCACTGGTTTTCCTTCCTTGTCTTATGACTCCAGCGACCTCACTCTTGCACTAGCAAGGCTGCAAAAGCAGTCATGTGGGCAATTGGGTTATGATGAGCATGACTTTTCAATTTTGGGGAATCCCACAAGCACCCCATGTGATATCCTTGGCAACCCTGGCATGCACCACTCTTCCACAAACCCGGGCTTCTTGGATTCTCTTAGAAGTGGGTTCCTTGGAACACAAAGCAATGTTCAGAATCTGTACTATGGATATGGGAATGGGGACATGGGGGAGGTGGACAATGGCAATGCTTGTGGTGGTGGGGTTAGTGGAGAGATGATGCTGCCTTATGATCAAGAAATGAGTGTTGCCACCACCCAAGCAGTCACAGTCACCACCATGAAACAAGAGCTTTGCAATGCCAGGGAGCAAAGTGAGAGTAGGGTGTTGTGGGGTTTCCCATGGCAACTCAATGGAGACACCAACATGGCTGAGCTTGACTCAGGAAGGGCTAATTGGAATGCTCTCAACTCATCCTGGCATGGACTTCTCAATAGTCCTCTAATGTAG 900 0.4778 MDPSTGQHQMSNQSLENMLACSKAQQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSSSKRIQDQGFTPNPNNPLTGFPSLSYDSSDLTLALARLQKQSCGQLGYDEHDFSILGNPTSTPCDILGNPGMHHSSTNPGFLDSLRSGFLGTQSNVQNLYYGYGNGDMGEVDNGNACGGGVSGEMMLPYDQEMSVATTQAVTVTTMKQELCNAREQSESRVLWGFPWQLNGDTNMAELDSGRANWNALNSSWHGLLNSPLM 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01227 299 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 192 IPR045174 GO:0003700|GO:0006355
Vian5g01227 299 MobiDBLite consensus disorder prediction 1 21 - -
Vian5g01227 299 MobiDBLite consensus disorder prediction 89 120 - -
Vian5g01227 299 MobiDBLite consensus disorder prediction 82 120 - -
Vian5g01227 299 Pfam Dof domain, zinc finger 36 92 IPR003851 GO:0003677|GO:0006355
Vian5g01227 299 MobiDBLite consensus disorder prediction 1 39 - -
Vian5g01227 299 ProSiteProfiles Zinc finger Dof-type profile. 38 92 IPR003851 GO:0003677|GO:0006355
Vian5g01227 299 ProSitePatterns Zinc finger Dof-type signature. 40 76 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01227 Vian-Chr5 34851676 34853008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01227 1 299 C2C2-Dof Transcription Factor Family AT2G28510 39.755 3.85e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vian5g01227 zf-Dof 6.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01227 - - gmx:100799737 488.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00451 11 4295607 4296820 Vian5g01227 5 34851676 34853008 PCT