Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00564 ATGGTGTCAGATGATGAAAAAAGGAAGCAACTTGATTGGAAACTAAGGTCAAGCATTATTAATGGAATAGCAAGAGGTCTTTTATACCTTCATGAGGATTCTAGACTCAAGGTAATCCACAGAGATCTCAAAGCTAGCAATGTTCTGTTAGATGATGAAATGAATCCAAAAATATCAGATTTTGGATTAGCTAGAGCATTTGAAAATGGTCAGAACCAGGCAAATACAAAGCGAGTAATGGGCACTTATGGATACATGGCTCCGGAGTATGCTATGGAAGGATTGTTTTCAATGAAATCTGATGTTTTCAGTTTTGGAGTACTTGTTCTAGAAATCATTTGTGGGAAAAAGAACAGTGGATTTTTTCTATCAAAACATGGTCAAAGTCTTCTTTTATATAGTTGGAGAATGTGGTGCGCAGGAAAATGTTTGGAATTGATGGATCCAGTGTTAGAAAATTCCTACATATCCAATGAAGTTGAGAAGTTTATACAGATTGGTTTATTGTGTGTTCAAGAAGCAGCAACAGCTAGACCAATCATGTCCACTGTCATGTTATTGTTGGCAACTGATGTGATGAACATTCCCAAACCCAACAAACCTGCATTCTCAGTTGGAAGAAGGACCTCAGTGGAAACTTCTGCTTCAAAAACTTCCAAAAGTGTTTCCATTAATGATGCATCAATCTCTAGTATTGCACCAAGGTGA 708 0.3715 MVSDDEKRKQLDWKLRSSIINGIARGLLYLHEDSRLKVIHRDLKASNVLLDDEMNPKISDFGLARAFENGQNQANTKRVMGTYGYMAPEYAMEGLFSMKSDVFSFGVLVLEIICGKKNSGFFLSKHGQSLLLYSWRMWCAGKCLELMDPVLENSYISNEVEKFIQIGLLCVQEAATARPIMSTVMLLLATDVMNIPKPNKPAFSVGRRTSVETSASKTSKSVSINDASISSIAPR 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00564 235 FunFam Liguleless narrow1 1 196 - -
Vian5g00564 235 SUPERFAMILY Protein kinase-like (PK-like) 8 188 IPR011009 -
Vian5g00564 235 SMART serkin_6 6 186 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00564 235 Pfam Protein tyrosine and serine/threonine kinase 8 184 IPR001245 GO:0004672|GO:0006468
Vian5g00564 235 ProSitePatterns Serine/Threonine protein kinases active-site signature. 38 50 IPR008271 GO:0004672|GO:0006468
Vian5g00564 235 ProSiteProfiles Protein kinase domain profile. 1 203 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00564 235 Gene3D Transferase(Phosphotransferase) domain 1 3 197 - -
Vian5g00564 235 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 3 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00564 Vian-Chr5 20234085 20234986 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00564 4 235 Receptor kinase-like Gene Family AT4G23150 54.008 1.45e-85 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian5g00564 PK_Tyr_Ser-Thr 1.6e-27 CL0016