Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00548 ATGGAAGAAGGGTTGTGCGAAAACTCAGTTCCTGGTTCTGGTTCTGGTTTGGTTGATAAAACTAGGATTGTAGAGGTTAAACCCCTGCGTAGTTTGGCACCTGTGTTGCCAAAATCCCTTCAACTTTCTATCTCTGGAAGGTACCCATCTGGGTTTCCTCCATTTGTTTTGTTCGGGGAACCCGTAGAGTCTCAGCCATCACCTACTCCTATTCCAGCACCAATAAGGTCCTATAGGAAGCCACCAGATGAAGAAGAAACCCCTCATGAAGTCAATGGAGACACTTCTTCACCTATTGAGGGTGTCAATGGTGAGAGTGTCGACGATAGCCCAAACCGTCCTTCGCAGCCTATGAAGAGCTGCAAAACATCCCAAAAAAGGCGCAAGAAAACTCAGGATTTTGGTGGCAGTTCTTCGGTTGGTGTTATTAGCATGGCCCAAAGGGATGATGGTGATCGGGAAGTGGTTAATCTTGTGCTCATGAATTTTGATTCTCTTCGGAGAAGGTTCTGCCAACTTGAAGATTCCAAGGAGTTGAACACATTGATGGGAACCAAGCGCCCGGATTTAAGAGCAAGCAATGTGATGACAAGCAAAGTGTTTCGCACAAATATGGGGAGGAGAGTAGGAGCAGTGCCTGGGGTTGAGATTGGGGATATTTTCTTTTTGCGGATGGAAATGTGTCATGTGGGTTTGCATGCGCAGTCAATGAGTGGAATTGACTACATGAGCGTCAGGGATGAGCTTCAGGAGGAAACAGTGGCTTTAAGCATTGTATCGTCAGGAGTATATGATGATGATGCAGAGGAGGATGATATTTTAGTTTATACTGGCCAAGGTGAGAACTTCAACAAGAAAGACAAGCATGTGGTTGATCAGAAGCTTCAAAGGGGTAATCTTGCTTTAGATAGAAGTACACACCGACAGAATGAAGTAAGAGTCATCCGGGGCTTGAGAGATGCGGTGAATAAACATGCAAAATTCTATGTCTATGATGGTCTGTATAAAATCCAGGGTTCTTGGATAGAAAAAGGGAAATATGGTGGTGGTGTATTCAAGTACAAGTTTGTTAGATTACCTGGGCAACCTAGTGCTTTTGCTGTTTGGAAATCAATTCAGAAGTGGAAGAGAGGTTCATCTTCAAGGACTGGTCTTATTCTTGCAGATCTCACCACAGGAGTTGAGACTATTCCTGTATCACTTGTCAATGATGTTGACAACGAGAAGGGGCCTTCTTTTTTCACCTATTCCAATTCTCTCAGAGATTCAAAACCATTCAGTATGGTGCAATCTTCATATGGCTGCAACTGTAACAAAACATGTGTCCCTGGAGATTTGAGCTGCTCTTGCATTCAAAGAAATGAAGGTGACTTCCCATATATTGCAAATGGTGTTCTAGTCAGTCGGAGACCATTGGTTCATGAGTGTGGCCCAATGTGTAAGTGCTTTCCTAACTGCAAGAATCGAGTATCGCAGACAGGTTTGAAGCACCAAATGGAAATTTTCAAAACCAAAGATAGAGGGTGGGGACTTCGATCACTTGATCCTATACGTGCTGGTACTTTTATTTGTGAGTATGCAGGAGAAGTAATTGATAGAGCCAAGGTAAATAAGAATGGGGGATATAATGATGAGTATGTTTTTGATACTAGTCGTATTTACAATCCATTCAAATGGAATTATGAGCCTAGCTTATTGGACGAAATAAGCTCCTCTACTGAAGATTATACTATACCCTCTCCTCTAATTATCAGTTCTAAAAATTTTGGAAATGTGGCTAGATACATGAATCATAGTTGCTCCCCAAATGTTTTCTGGCAGCCAGTCTTGTACGCAGAAAATAATCAATACTTTCTTCACATTGCATTTTTTGCCCTTAGACACATTCGTCCAATGGCAGAGTTAACATATGATTATGGATGTTCTGGTCATGCTGATGGTAGTAGTGCACCCCAAGGGAGAAAGAAATGCTTGTGTGAATCAGCAAAATGCGGTGGTTCTTTTGGTTGA 2010 0.4239 MEEGLCENSVPGSGSGLVDKTRIVEVKPLRSLAPVLPKSLQLSISGRYPSGFPPFVLFGEPVESQPSPTPIPAPIRSYRKPPDEEETPHEVNGDTSSPIEGVNGESVDDSPNRPSQPMKSCKTSQKRRKKTQDFGGSSSVGVISMAQRDDGDREVVNLVLMNFDSLRRRFCQLEDSKELNTLMGTKRPDLRASNVMTSKVFRTNMGRRVGAVPGVEIGDIFFLRMEMCHVGLHAQSMSGIDYMSVRDELQEETVALSIVSSGVYDDDAEEDDILVYTGQGENFNKKDKHVVDQKLQRGNLALDRSTHRQNEVRVIRGLRDAVNKHAKFYVYDGLYKIQGSWIEKGKYGGGVFKYKFVRLPGQPSAFAVWKSIQKWKRGSSSRTGLILADLTTGVETIPVSLVNDVDNEKGPSFFTYSNSLRDSKPFSMVQSSYGCNCNKTCVPGDLSCSCIQRNEGDFPYIANGVLVSRRPLVHECGPMCKCFPNCKNRVSQTGLKHQMEIFKTKDRGWGLRSLDPIRAGTFICEYAGEVIDRAKVNKNGGYNDEYVFDTSRIYNPFKWNYEPSLLDEISSSTEDYTIPSPLIISSKNFGNVARYMNHSCSPNVFWQPVLYAENNQYFLHIAFFALRHIRPMAELTYDYGCSGHADGSSAPQGRKKCLCESAKCGGSFG 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00548 669 ProSiteProfiles Pre-SET domain profile. 433 494 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vian5g00548 669 ProSiteProfiles SET domain profile. 497 640 IPR001214 GO:0005515
Vian5g00548 669 Pfam Pre-SET motif 391 489 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vian5g00548 669 Pfam SAD/SRA domain 209 362 IPR003105 -
Vian5g00548 669 ProSiteProfiles YDG domain profile. 210 358 IPR003105 -
Vian5g00548 669 SMART G9a_1 205 362 IPR003105 -
Vian5g00548 669 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 192 377 - -
Vian5g00548 669 SMART set_7 497 646 IPR001214 GO:0005515
Vian5g00548 669 SUPERFAMILY SET domain 373 647 IPR046341 -
Vian5g00548 669 Pfam SET domain 508 640 IPR001214 GO:0005515
Vian5g00548 669 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 24 669 IPR025794 GO:0016571
Vian5g00548 669 MobiDBLite consensus disorder prediction 92 121 - -
Vian5g00548 669 SMART preset_2 387 481 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vian5g00548 669 SUPERFAMILY PUA domain-like 192 380 IPR015947 -
Vian5g00548 669 Gene3D - 192 378 IPR036987 -
Vian5g00548 669 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 81 664 - -
Vian5g00548 669 MobiDBLite consensus disorder prediction 59 146 - -
Vian5g00548 669 Gene3D SET domain 379 668 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00548 Vian-Chr5 19354003 19356012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00548 19 669 Su(var)3-9 homologs AT1G73100 49.343 0.0 648
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vian5g00548 SAD_SRA 1.5e-46 CL0178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00548 5 19354003 19356012 Vian5g00548 5 19354003 19356012 ECH