Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00529 ATGCTGTATAACCTCTCTTTGTATTATCAACTATCAAGAATACAAAGTACACTAGTGGAAAATGGAAAGGCCCAAGCTGCTAATTTTCCATTTTGTACAATAGAGCCAAATGTAGGGATTGTTGCTGTTCCCGATTCTCGTCTCCCTGTACTCTCGGATCTCAGCAAATCTCAGCGTTCTGTTCCAGCATCAATAGAATTTGTGGATATTGCTGGGCTTGTCAAGGGTGCAAGTCAAGGCGAGGGTTTGGGTAACAAGTTTTTGTCGCATATTCGTGAGGTGGATTCTATACTTCAGGTTGTACGATGTTTTGAAGACAACGACATTGTTCATGTGAATGGGAAGGTTGACCCCAAGTCTGATATCGATGTTATCAATTTGGAGCTCGTTTTCTCAGATTTGGACCAGATTGAAAAAAGAATTGATAAGCTAAAGAAGGGCAAGGCAAAGGATTCACAATCTAAACTCAAGGAAGAGGCAGAAAAGTCTGCATTGGAAAAGGTTCAACGGGCGCTTATGGATGGAAAGCCTGCACGATCTGTGACCTTAACAGATTTTGAAAGGGATGCTGTAAAACATCTCTGCTTACTCACCATGAAACCTATTATATATGTGGCAAATGTTGCAGAAACCGATCTTGCAGATCCTGCAGACAATAATTTTGTCAAGGATGTTACAAATGTTGCATCTGAGTTGCAGTCCAGAATTGTAACAATTTCAGCACAGGTTGAGGCAGAGCTTACTGAGCTACCTATTGAAGAACGACAAGAATATTTGCAATCTCTTGGTGTTAGTGAAAGTGGTCTTGGAAACTTAATCAGGGCAACTTATGACCTTTTGGGTCTGAGAACTTATTTTACTTCTGGTGAAAAGGAGACAAAAGCGTGGACAATACTTGCAGGAATGACTGCACCTCAAGCTGCTGGAGTTATTCACTCTGACTTTGAGAAAGGTTTCATTCGAGCAGAGACAGTGTCTTATGATGATTTTGTTGCTGCTGGTTCACTTGCTGCAGCACGAGAGAAAGGAGTTTTGAGATCTGAAGGAAAAGACTATGTTGTACAAGAAGGAGATGTCATGTTGTTTCGGTTCAATGTTTAG 1101 0.4105 MLYNLSLYYQLSRIQSTLVENGKAQAANFPFCTIEPNVGIVAVPDSRLPVLSDLSKSQRSVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDIDVINLELVFSDLDQIEKRIDKLKKGKAKDSQSKLKEEAEKSALEKVQRALMDGKPARSVTLTDFERDAVKHLCLLTMKPIIYVANVAETDLADPADNNFVKDVTNVASELQSRIVTISAQVEAELTELPIEERQEYLQSLGVSESGLGNLIRATYDLLGLRTYFTSGEKETKAWTILAGMTAPQAAGVIHSDFEKGFIRAETVSYDDFVAAGSLAAAREKGVLRSEGKDYVVQEGDVMLFRFNV 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00529 366 SUPERFAMILY TGS-like 282 363 IPR012676 -
Vian5g00529 366 Pfam 50S ribosome-binding GTPase 16 109 IPR006073 GO:0005525
Vian5g00529 366 Gene3D - 110 200 IPR023192 -
Vian5g00529 366 FunFam Ribosome-binding ATPase YchF 269 365 - -
Vian5g00529 366 Pfam Protein of unknown function (DUF933) 282 365 IPR013029 -
Vian5g00529 366 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 304 IPR027417 -
Vian5g00529 366 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 1 281 IPR031167 GO:0005525
Vian5g00529 366 FunFam Ribosome-binding ATPase YchF 110 200 - -
Vian5g00529 366 CDD YchF 16 280 IPR041706 -
Vian5g00529 366 Gene3D - 45 365 IPR012675 -
Vian5g00529 366 Gene3D - 21 281 IPR027417 -
Vian5g00529 366 PANTHER OBG GTPASE FAMILY 19 365 - -
Vian5g00529 366 PIRSF EngD 12 366 IPR004396 GO:0005524|GO:0005525|GO:0016887
Vian5g00529 366 Hamap Ribosome-binding ATPase YchF [ychF]. 2 366 IPR004396 GO:0005524|GO:0005525|GO:0016887
Vian5g00529 366 PRINTS GTP1/OBG GTP-binding protein family signature 84 102 IPR006073 GO:0005525
Vian5g00529 366 PRINTS GTP1/OBG GTP-binding protein family signature 67 82 IPR006073 GO:0005525
Vian5g00529 366 PRINTS GTP1/OBG GTP-binding protein family signature 23 41 IPR006073 GO:0005525
Vian5g00529 366 NCBIfam redox-regulated ATPase YchF 16 366 IPR004396 GO:0005524|GO:0005525|GO:0016887
Vian5g00529 366 CDD TGS_YchF_OLA1 280 364 IPR013029 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00529 Vian-Chr5 16469430 16486510 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00529 5 16469430 16486510 Vian5g00529 5 16469430 16486510 ECH