Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00512 ATGGAAGACATAAACAGGTGGCTATTATCCTCTTATCTGAATGAAAGTGTTGACCATGAATTTGCCATCAGAAGGTATTGTCCTGCAAGAATGGAGCAAGAGCAAGGAGGAGAGTGCCAAGATCAAGAGGGAGTAGTGTTTGATGATACTGAATTATGTTATTCTGATGCCAGCACTCCTTGTTTAGCTTCATCAGAAGTTGATGACTTTGTTGACAGCTTCATCAACATGGATCAGTATGAGAAAGCAGATAAAGGGCACCAAGAGAAGCATCAAAGTTTTGGCCACTTTGTGGTGATGAATAATGATGAGGATGAGGCTGATGCTGATGAATACTCCTCCATGAATGATGTCTTTGGATATCTTCCAGCCACCATGGAGGATTCAGAGTTGGAGATGTATGAAAATCTGACAATGTTGGAGGAAGAGGTTGCAATGAGTGACTCTTTTGGTACTTTACCTGAGTTTGTGCATTGTGGAAAAGAGGCCAACCTTGGTGTGGAGCAAGGGTTAGAGTTGGTTCATATGCTGCTGGCCTGTGCTGAAGCTGTGGGGTGCAGGGACAACCACCAGACAGAGTTGCTGATTAACAGAATCTGGGCTTTGGCAAGCCCTTCAGGAGATGCACTGCAGAGAGTTTCTTACTGTTTTGCCACAGGATTGAAGTGCAGGTTGTCAAAAAGTACTTTTATGGATATGCCTTTGATCAATAGGGAGAATAAGCTGGAAGCATTTCAACTTCTTTACCAAATCACACCTTACATTACCTTTGGTTTCATGGTTGCAAATGAAGCCATATTCCAAGCATCACAAGGAAAGAGCTCAATACACATTGTTGATTTAGGAATGCAGCATACCCTTCAATGGTCTTCTCTGATCAGGGCCTTTGTTTCAAGGCCTGAAGGACCTCCAATGGTTAGGATCACTGGCTTAACAGACAATGAAGATAACTCTAAACTTCAAACCAGCATGAATGTGCTTGTGCAGGAAGCAAGCTCTTTGGGAATGCACCTTGAATTCCACACAATTTCTGAGCCTGCATCTCCTTCAGTTTTTACTGTGGAGAAGCTGAACTTGAGAAAAGGTGAAGTTTTATTTGTTAATAGTATCTTGCAGTTGCACAAGTATGTGAAAGAGAGTAGAGGCAATCTGAAGGAAATTCTGCTGTCAGTGAAGAAGTTAGGTCCAACTGCTTTTACAGTGGTGGAGCAAGACACAAACCATAATGGCCCTTTCTTCCTTGGGAGATTTTTGGAGTCCCTTCACTATTACTCAGCCATATTTGACTCTCTTGAGGCATGCATGCCAAGAAACAGCCAACAAAGGATGAAGATAGAGAGATTACACTTTGCAGAGGAAATTCTGAATATTGTAGCTTATGAGGGTCCAGAGAGAATAGAAAGACATGAAAGGGTAGAGCAGTGGAGAAGGCAATTAGGCAGAGCAGGATTTCAGGTGATGCCATTGAAGTGCACAAGCCAAGTTAGAATGATGCTTTCTGTTTATGACTGTGATGGCTACACATTATCAAGTGAAAAGGGAAACCTTCTACTTGGATGGAAAGGAAGGCCAGTAATTATGTCTTCTGCATGGCAAGTGGCAAGTGTTTGA 1611 0.4246 MEDINRWLLSSYLNESVDHEFAIRRYCPARMEQEQGGECQDQEGVVFDDTELCYSDASTPCLASSEVDDFVDSFINMDQYEKADKGHQEKHQSFGHFVVMNNDEDEADADEYSSMNDVFGYLPATMEDSELEMYENLTMLEEEVAMSDSFGTLPEFVHCGKEANLGVEQGLELVHMLLACAEAVGCRDNHQTELLINRIWALASPSGDALQRVSYCFATGLKCRLSKSTFMDMPLINRENKLEAFQLLYQITPYITFGFMVANEAIFQASQGKSSIHIVDLGMQHTLQWSSLIRAFVSRPEGPPMVRITGLTDNEDNSKLQTSMNVLVQEASSLGMHLEFHTISEPASPSVFTVEKLNLRKGEVLFVNSILQLHKYVKESRGNLKEILLSVKKLGPTAFTVVEQDTNHNGPFFLGRFLESLHYYSAIFDSLEACMPRNSQQRMKIERLHFAEEILNIVAYEGPERIERHERVEQWRRQLGRAGFQVMPLKCTSQVRMMLSVYDCDGYTLSSEKGNLLLGWKGRPVIMSSAWQVASV 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00512 536 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 130 527 IPR005202 -
Vian5g00512 536 ProSiteProfiles GRAS family profile. 164 532 IPR005202 -
Vian5g00512 536 Pfam GRAS domain family 173 532 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00512 Vian-Chr5 15374249 15375859 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00512 168 536 GRAS Transcription Factor Family AT1G66350 39.418 1.00e-76 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vian5g00512 GRAS 1.4e-106 CL0063