Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00489 ATGAATAGTTTGGGTTTGGTAGGTGTTGCAAAGGTTGTGTTGAAAAAGGGGAAGACACAAATCTTTAAGGATGGCAACCCAATGGTGTACAGTGGAGCTGTTGATAGAATAATCGGGCGGCCCCCTCCTAAGACTGGAGATGTTGTTCTTGTAGCCGATGGGACTGAGAAACCAATTGGATGGGGTTTGTACAACTCGGTTTCTATGTTCTGTGTTCGGCTCATGCAGCTTGAAGATGAAGCTACCAGCGATTCATATTGTGCACTCAATATGGAGAAACTGATTGAAACAAGAATTGATGCAGCTGTTGAAGTGCGTAGAAGGTTGGGTCTTCCATCAGTCCACACAAATGCATACCGCCTAATCAACAGTGAGGGTGACAGATTATCAGGATTGATAATTGACGTCTTTGGAGATGTAGCTGTAGTAGCATCATCTGCTGCTTGGGTTGAGAAATACAAATCAGAGATAGAGGCATGCCTCGGGAAAATCAATTATATCAATCATATAAATTGGAGGCCATCTGTTGATATTTTGAAGGAGGACGGGATGAATGAATCTGATTTAAAAGAAATGCATTCATCTACATGCCCTGAAAGAACAAAGATTGTGGAAAATGGAATTGGATACACAATTTCACTTAAGGGCCAGAAGACAGGATTTTATGCAGATCAGCGTGAGAATCGGCAGTTTATATCAACAATTTCAGATGGTCTAAAGGTTCTTGATCTTTGCTGCTATAGTGGTGGTTTTGCTCTAAATGCTGTGCGTGGAGGTGCTTTAAATGTCACTGGTATTGACACATCACTGCTAGCTTTGGAGCTTGCTAAAGAAAATGTTCTACTCAACAGCATTGATCCTGGAAGAATATCCTTTTTGAAGGAAGATGCAACTGAATATATGAAGGGTGCTCTCTTGAGAAATGAATCTTGGGATATTGTCATCATCGATCCTCCTAAACTAGCACCAACAAAAAAGGTTCTACACAGTGCATCTGGCATGTACCGGAATTTGAATTCCCTTGCCATGCAACTCACAAAAAGAGGTGGTCTTCTGATGACCTGTTCCTGTTCTGGAGCTGTGACCCAAAGTGGGATATTTCTACGTATTCTTCAGGGTGCAGCATCTATGGCAGGTAGGAAAATCACTGTTCTCAGACAGTCTGGAGCAGCATGTGATCATCCTATTGATCCATCATATCCCGAAGGCGCATACCTGACCAACATTCTTTTGAGAGTTTCATGA 1245 0.4209 MNSLGLVGVAKVVLKKGKTQIFKDGNPMVYSGAVDRIIGRPPPKTGDVVLVADGTEKPIGWGLYNSVSMFCVRLMQLEDEATSDSYCALNMEKLIETRIDAAVEVRRRLGLPSVHTNAYRLINSEGDRLSGLIIDVFGDVAVVASSAAWVEKYKSEIEACLGKINYINHINWRPSVDILKEDGMNESDLKEMHSSTCPERTKIVENGIGYTISLKGQKTGFYADQRENRQFISTISDGLKVLDLCCYSGGFALNAVRGGALNVTGIDTSLLALELAKENVLLNSIDPGRISFLKEDATEYMKGALLRNESWDIVIIDPPKLAPTKKVLHSASGMYRNLNSLAMQLTKRGGLLMTCSCSGAVTQSGIFLRILQGAASMAGRKITVLRQSGAACDHPIDPSYPEGAYLTNILLRVS 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00489 414 CDD PUA_RlmI 10 80 IPR041532 GO:0003723
Vian5g00489 414 Pfam PUA-like domain 12 75 IPR041532 GO:0003723
Vian5g00489 414 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 97 409 IPR029063 -
Vian5g00489 414 SUPERFAMILY PUA domain-like 11 79 IPR015947 -
Vian5g00489 414 PANTHER RIBOSOMAL RNA LARGE SUBUNIT METHYLTRANSFERASE 8 413 - -
Vian5g00489 414 Gene3D RNA methyltransferase domain (HRMD) like 91 194 - -
Vian5g00489 414 Gene3D PUA domain 9 80 IPR036974 GO:0003723
Vian5g00489 414 SMART pua_5 10 104 IPR002478 GO:0003723
Vian5g00489 414 Gene3D Vaccinia Virus protein VP39 201 414 IPR029063 -
Vian5g00489 414 CDD RlmI_M_like 94 188 - -
Vian5g00489 414 CDD AdoMet_MTases 240 355 - -
Vian5g00489 414 Pfam S-adenosylmethionine-dependent methyltransferase 190 370 IPR019614 GO:0008168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00489 5 14027394 14039524 Vian5g00489 5 14027394 14039524 ECH