Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00473 ATGGATAGAATGTTCCCTCCCAAGAAGCCTTCTACTATGAATTCCAATGACAGACCCATGTGTGTTCAAGGAGACTCAGGCCTTGTTCTCACCACAGACCCTAAACCACGTCTTCGTTGGACTGTTGAACTCCATGAACGCTTTGTTGATGCTGTTGCTCAGCTTGGAGGACCTGACAAGGCCACTCCTAAGACAATCATGAGGGTTATGGGTGTGAAGGGTCTCACCCTTTATCATCTCAAGAGCCACCTTCAGAAATTCAGACTTGGAAAACAGCCCCACAAGGATTTCAATGAACACTCTATCAAGGATGGCATGAGAGCTTCTGCTTTAGAACTTCAACGAAATATTGGCTCCTCTTCTGCCATGATTGGTCGCAACATGAACGAGATGCAAATGGAAGTGCAGAGAAGACTGCACGAACAACTAGAGGTTCAGAAAAACCTTCAGCTGAGGATTGAGGCACAAGGAAAATACATGCAAAGTATATTGGAGAAGGCTTATCACACACTTGCTCATGAAAACATGGGCACAGGCATGAAGGGTGTGGGATCAGCAGGTCAAGGAAGCACTGAGATGGGTGTGATGAAAGAATTCTGTTCTCTGAATTACCCTTCTTTTCAAGATCTGAACTTATACGGTGGTGGTGGTGGTAGTGAAGAACTTGAAGGGTTTATGGCATCGAATAGTGAGAGTGTGTTTGAGGGAAAGAAGAGAGTTTGCCCCTACAGTGGAAGTGGGAAGAGTCCATTGATTTGGAATGATGATCTCAGGCTTCAAGATTTGGGAACAGCTTCATCATGCATTAGCCCTGAAGAGGACCCTTTCAAAGGGGATCACAAGGTTCAGATTTCACCACCATCAATGGATAGTGACCCCATGTCAGAGATCTATGACACAAAGCCATTGTTGCTGCATGGAGAAAGTGTATGTGTAGGTACCAATCACAATAAATTTGAAGCTTCTATGAAGCTAGAAAGACCTTCACCACAAAGATCACCCCTTCAACCAGAAAGGAATAGTCCTATGATCAATGCTAGTTCCATGGCACAAGGGTTTTGA 1062 0.4463 MDRMFPPKKPSTMNSNDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKDFNEHSIKDGMRASALELQRNIGSSSAMIGRNMNEMQMEVQRRLHEQLEVQKNLQLRIEAQGKYMQSILEKAYHTLAHENMGTGMKGVGSAGQGSTEMGVMKEFCSLNYPSFQDLNLYGGGGGSEELEGFMASNSESVFEGKKRVCPYSGSGKSPLIWNDDLRLQDLGTASSCISPEEDPFKGDHKVQISPPSMDSDPMSEIYDTKPLLLHGESVCVGTNHNKFEASMKLERPSPQRSPLQPERNSPMINASSMAQGF 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00473 353 Gene3D - 34 92 - -
Vian5g00473 353 MobiDBLite consensus disorder prediction 333 353 - -
Vian5g00473 353 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Vian5g00473 353 MobiDBLite consensus disorder prediction 1 20 - -
Vian5g00473 353 Pfam MYB-CC type transfactor, LHEQLE motif 131 169 IPR025756 -
Vian5g00473 353 MobiDBLite consensus disorder prediction 268 293 - -
Vian5g00473 353 MobiDBLite consensus disorder prediction 321 353 - -
Vian5g00473 353 FunFam Myb family transcription factor 34 92 - -
Vian5g00473 353 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
Vian5g00473 353 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Vian5g00473 353 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 13 218 IPR044848 GO:0003700
Vian5g00473 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00473 Vian-Chr5 13033287 13036740 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vian5g00473 Myb_DNA-binding 4.8e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00473 5 13033287 13036740 Vian5g00473 5 13033287 13036740 ECH
Vian11g01379 11 23032622 23034605 Vian5g00473 5 13033287 13036740 PCT