Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00462 ATGCTGCAAGGCTTTTTACACAGCTTCAAGCATAGATCCAAACCACAATCGCTGTTGGAAATCCTAGTGAAAGTGATGGAGGACGGAGTTGGTTATCCCGACACAGTTGATGGTAGAGAGTTGGTCAACACGCATGCATCTTGGGCCAATGAAGGTGATCCCGCCGACGATGCTGCTGAAGGTAGCCGTGCCGAGAAGCCTCTCCTCGTGCAGAAATTCCTCTTAAAGGGTGTCATTGCATTTGTTCCTCAATCGCCTACCCAAAGGCCTCGTTTACCTAATATTCTCGAGATGAATCAGGCTTATGCAAATTCATCAAATAATTTAGAAAGTCATGTCCACAAAGAAAATCAATATACTACTAATCATGCTTTCATGAGTGACTACAAAACCACGACTAAGCACACCACTCCAAGTGCAAGAATGTCTTCAAACGACAACCCTTCAACAAGATCACCAAGAGCAATAGCAGAAGCTGCAAGAAATTTTAATGTACCTACAAAAAAAAGCATTCTAGGTGACCATAGAAGTGGCAGTAGCTCTCGTAGTGATAGTTTGGAGAGCATTTGCAGTGCACATATTAAGCCTCATACTGGAGATGATGTGAGGTGGGATGCAATTAACATGGTTTCTAAGGGTAATGGTCTTGATCTCAGTCATTTCAAGCTTCTAAAGCGTGTTGGATATGGTGATATTGGAAGTGTGTACCTTGTAGAACTTAAAGGAACCAAAGCATTCTTTGCCATGAAAGTAATGGATAAGGCAGCACTTGCTAGTAGAAACAAGCTTTTGAGGGCACAAACAGAAAGAGAGATTCTTGGACTTCTTGATCACCCTTTTCTGCCAACTTTATATTCTTATTTTGAGACTGATAAATACTATTGTCTGGTCATGGAGTTTTATTGTTCAGAAATTTTGTTAGCCTTGGAATACTTGCACATGTTAGGCATTGTGTATAGAGACTTAAAACCAGAAAATGTTCTAGTTCGAGATAAAGGTCACATAATGTTATCAGATTTTGACTTATCTCTTCGGTGCTCTGTGAATCCTACACTAGTGAAGTCCTCATCTACACATGAAAGTAGTAATGGTCCTTCTGGAGGCATTCTAAGTCATGATCAAACAATACATGGTTGCATGCAGCACTCAAGTTTCTTTCCACGGATTTTGCCTTCAAAAAAGAATCGCAAGACAAAGTCTGATTTTGGCCTTGTGGTTGGAGGATGCCTCCCTGAACTAATGGCTGAGCCTACAAATGTGAGGTCAATGTCCTTTGTAGGGACACATGAGTATCTTGCACCAGAGATTATTCGTGGTGAAGGACATGGTAGTGCAGTGGATTGGTGGACCTTTGGAATCTTCTTGTATGAGCTTTTGCATGGGATAACACCCTTTAAAGGTGCTGGAAACAAAGCTACCCTTTTCAATGTTGTAGGACAGCCCTTAAGGTTTCCAGAAAAACCAGTTGTTAGCAAAGTTGCAAGAGACCTTATAGAAGGGTTGTTGGTGAAAGAGCCTAAAAAAAGATTTGCTTACAACAGAGGTGCCACAGAAATAAAGCAACATCCTTTCTTCCATGGAGTGAATTGGGCTCTTGTTAGAAGTGCTACACCTCCTATTATACCAGAATCTTTTGATTTTTCTAAGTACGATAGAAAAACAGATGTTCCACCAATGGATAAGAAGGTTACAGATATTATTGCAAGTGATAAAAGCAATCATACACAACCAGATTCATCTTATGAAAATTTTGAGTACTTTTAA 1764 0.4031 MLQGFLHSFKHRSKPQSLLEILVKVMEDGVGYPDTVDGRELVNTHASWANEGDPADDAAEGSRAEKPLLVQKFLLKGVIAFVPQSPTQRPRLPNILEMNQAYANSSNNLESHVHKENQYTTNHAFMSDYKTTTKHTTPSARMSSNDNPSTRSPRAIAEAARNFNVPTKKSILGDHRSGSSSRSDSLESICSAHIKPHTGDDVRWDAINMVSKGNGLDLSHFKLLKRVGYGDIGSVYLVELKGTKAFFAMKVMDKAALASRNKLLRAQTEREILGLLDHPFLPTLYSYFETDKYYCLVMEFYCSEILLALEYLHMLGIVYRDLKPENVLVRDKGHIMLSDFDLSLRCSVNPTLVKSSSTHESSNGPSGGILSHDQTIHGCMQHSSFFPRILPSKKNRKTKSDFGLVVGGCLPELMAEPTNVRSMSFVGTHEYLAPEIIRGEGHGSAVDWWTFGIFLYELLHGITPFKGAGNKATLFNVVGQPLRFPEKPVVSKVARDLIEGLLVKEPKKRFAYNRGATEIKQHPFFHGVNWALVRSATPPIIPESFDFSKYDRKTDVPPMDKKVTDIIASDKSNHTQPDSSYENFEYF 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00462 587 MobiDBLite consensus disorder prediction 568 587 - -
Vian5g00462 587 ProSiteProfiles Protein kinase domain profile. 221 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00462 587 ProSiteProfiles AGC-kinase C-terminal domain profile. 526 587 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vian5g00462 587 MobiDBLite consensus disorder prediction 569 587 - -
Vian5g00462 587 ProSitePatterns Serine/Threonine protein kinases active-site signature. 317 329 IPR008271 GO:0004672|GO:0006468
Vian5g00462 587 MobiDBLite consensus disorder prediction 132 152 - -
Vian5g00462 587 SMART serkin_6 221 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00462 587 Gene3D Phosphorylase Kinase; domain 1 210 303 - -
Vian5g00462 587 SUPERFAMILY Protein kinase-like (PK-like) 218 554 IPR011009 -
Vian5g00462 587 PANTHER FLIPPASE KINASE 1-RELATED 300 550 - -
Vian5g00462 587 Pfam Protein kinase domain 418 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00462 587 Pfam Protein kinase domain 300 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00462 587 Gene3D Transferase(Phosphotransferase) domain 1 419 543 - -
Vian5g00462 587 FunFam Serine/threonine-protein kinase OXI1 289 348 - -
Vian5g00462 587 Gene3D Transferase(Phosphotransferase) domain 1 304 345 - -
Vian5g00462 587 FunFam Serine/threonine-protein kinase D6PK-like 219 304 - -
Vian5g00462 587 FunFam Serine/threonine-protein kinase AGC1-7 418 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00462 Vian-Chr5 12484901 12489627 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vian5g00462 Pkinase 1.4e-20 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00462 5 12484901 12489627 Vian5g00462 5 12484901 12489627 ECH