Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00461 ATGGAAAACCACATCTACTCCTCCTACAGCCCGTCCACCAACTACCGATTTCGCGACTCCGACTCCTCAACCATGTTCCTCTCCCACCACCACCGTGCCGCCGACTCCGCCGCCCTCCGCTTCTCCTCCTCCCTCGCCGACGACATTGCCCCGCCAGGTGTTACCTCCCGCATCGCCTCTTCCGCCGCCGCCAACTACCTCTCCCCCTGGGCCTCCTCCGCCGCCACCTCCTCCCTCGACTTCAAACGCTCCTCTGACGATGAAATGATAGGTGGTCCTGAGGGTGAGGATGCGAAGCACATCATAGCATTGGATTCTGGCTGCCAGCACAGGGTTAGTTATGGATATGATTTTGGAATCTCAATTGATGATGCAGATTGGTGGCTGGTATTGCAAATAAGCGGAGATATGCTTAGGATAGATTCTGTTATTATTGAATGCATGCAACTTGTTATGAACAACATTGATTATACTCTCTACCATCCAACCATTTTGGGTACTATTGGGCAAAGTGAAGCTTGGTATTCTACAAACTCACTGGCCAAGCGCCCTAGATATGAAAGTGCTTCCAATATGACTATATATCCACAGAGGCCAGGAGAAAAAGATTGTGCCCACTATATGCTCACAAGAACCTGTAAGTTTGGAGATAGCTGCAAGTTTGACCATCCTGTTTGGGTTCCTGAGGGTGGAATCCCGGATTGGAAAGAGGTTCCAAATGTTGTTACAAGTGAAACTCCTCCTGAGAGACCAGGGGAACCAGATTGTCCATACTTTCTGAAAACTCAGAGATGCAAGTTTGGTTCAAAGTGCAAATTTAATCATCCTAAGGTTTCCTCTGAAAATGATGATGTATCTTCTGGCTTACCTGAGAGGCCATCAGAGCCCCCTTGCTCGTTCTACATGAAAACTGGAAAATGTAAATTTGGTGCTTCTTGTAAATTCCATCACCCCAAGGATATCCAGATTCAGTCGTCTGATGAGTTGAGTCATACTCAGACAGAAATAAATTCTATGATAGGAGGTTCACTTGGAGATACACAACCAATTAAGTCTCTAATATCTCCATCATTGCAAAATAGCAAAGGACTTCCAGTTAGACTGGGGGAAGTGGATTGCCCATTCTACATGAAAACTGGCAGTTGCAAGTACGGTGCCACTTGCCGCTACAATCATCCTGACAGGAATGCAATTAATCCACCCATTGCTGGATTAGGCGCTTCTATTTTGCCATCCTCAGCTGCTAGTCTGAATATTGGACTTCTTAGTCCAGCTGTGTCTGTTTATCAAGCTTTTGACCCAAGGCTGTCAAATCCAATGTCTCAGGTGGGAATTGCAGAATCCATCTATCCTCAACGACCTGGCCAGATCGAATGTGATTTTTACATGAAAACTGGCGACTGTAAATTCGGTGAAAGATGTAAGTATCATCACCCAATTGATCGCTCAGCACCATCACTGTCAAAGCAGGCTTCTGTCAAGCTCACTCCTGCAGGACTACCAAGAAGAGAGGGTGCGGTTATTTGTCCATATTATTTGAAAACTGGAACATGCAAGTTTGGTGCGACCTGCAAGTTTGACCACCCACCACCTGGAGAAGTTGTGGAGATGGCAAAATCTCAAGGAACATCAGCCGATGGAGGGGAAGCAGAAGACTGA 1659 0.4671 MENHIYSSYSPSTNYRFRDSDSSTMFLSHHHRAADSAALRFSSSLADDIAPPGVTSRIASSAAANYLSPWASSAATSSLDFKRSSDDEMIGGPEGEDAKHIIALDSGCQHRVSYGYDFGISIDDADWWLVLQISGDMLRIDSVIIECMQLVMNNIDYTLYHPTILGTIGQSEAWYSTNSLAKRPRYESASNMTIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPVWVPEGGIPDWKEVPNVVTSETPPERPGEPDCPYFLKTQRCKFGSKCKFNHPKVSSENDDVSSGLPERPSEPPCSFYMKTGKCKFGASCKFHHPKDIQIQSSDELSHTQTEINSMIGGSLGDTQPIKSLISPSLQNSKGLPVRLGEVDCPFYMKTGSCKYGATCRYNHPDRNAINPPIAGLGASILPSSAASLNIGLLSPAVSVYQAFDPRLSNPMSQVGIAESIYPQRPGQIECDFYMKTGDCKFGERCKYHHPIDRSAPSLSKQASVKLTPAGLPRREGAVICPYYLKTGTCKFGATCKFDHPPPGEVVEMAKSQGTSADGGEAED 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00461 552 SUPERFAMILY CCCH zinc finger 456 481 IPR036855 GO:0046872
Vian5g00461 552 Gene3D - 155 235 - -
Vian5g00461 552 Gene3D - 236 284 - -
Vian5g00461 552 SUPERFAMILY CCCH zinc finger 507 530 IPR036855 GO:0046872
Vian5g00461 552 SMART c3hfinal6 367 394 IPR000571 GO:0046872
Vian5g00461 552 SMART c3hfinal6 453 480 IPR000571 GO:0046872
Vian5g00461 552 SMART c3hfinal6 198 225 IPR000571 GO:0046872
Vian5g00461 552 SMART c3hfinal6 292 319 IPR000571 GO:0046872
Vian5g00461 552 SMART c3hfinal6 250 277 IPR000571 GO:0046872
Vian5g00461 552 SMART c3hfinal6 503 530 IPR000571 GO:0046872
Vian5g00461 552 ProSiteProfiles Zinc finger C3H1-type profile. 503 531 IPR000571 GO:0046872
Vian5g00461 552 ProSiteProfiles Zinc finger C3H1-type profile. 292 320 IPR000571 GO:0046872
Vian5g00461 552 SUPERFAMILY CCCH zinc finger 198 225 IPR036855 GO:0046872
Vian5g00461 552 SUPERFAMILY CCCH zinc finger 296 320 IPR036855 GO:0046872
Vian5g00461 552 SUPERFAMILY CCCH zinc finger 255 276 IPR036855 GO:0046872
Vian5g00461 552 FunFam Zinc finger CCCH domain-containing protein 37 236 283 - -
Vian5g00461 552 PANTHER PROTEIN PHOSPHATASE RELATED 355 539 - -
Vian5g00461 552 FunFam Zinc finger CCCH domain-containing protein 37 157 235 - -
Vian5g00461 552 Gene3D - 290 401 - -
Vian5g00461 552 FunFam zinc finger CCCH domain-containing protein 37 451 544 - -
Vian5g00461 552 ProSiteProfiles Zinc finger C3H1-type profile. 453 481 IPR000571 GO:0046872
Vian5g00461 552 ProSiteProfiles Zinc finger C3H1-type profile. 367 395 IPR000571 GO:0046872
Vian5g00461 552 ProSiteProfiles Zinc finger C3H1-type profile. 250 278 IPR000571 GO:0046872
Vian5g00461 552 ProSiteProfiles Zinc finger C3H1-type profile. 198 226 IPR000571 GO:0046872
Vian5g00461 552 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 456 479 IPR000571 GO:0046872
Vian5g00461 552 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 200 224 IPR000571 GO:0046872
Vian5g00461 552 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 507 530 IPR000571 GO:0046872
Vian5g00461 552 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 295 319 IPR000571 GO:0046872
Vian5g00461 552 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 252 277 IPR000571 GO:0046872
Vian5g00461 552 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 370 393 IPR000571 GO:0046872
Vian5g00461 552 Gene3D - 452 545 - -
Vian5g00461 552 SUPERFAMILY CCCH zinc finger 371 394 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00461 Vian-Chr5 12417500 12430273 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vian5g00461 zf-CCCH 1.8e-10 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00461 5 12417500 12430273 Vian5g00461 5 12417500 12430273 ECH