Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00456 ATGCCATTTTGCAGTGGCCAAAAGTTTTTCAAGAGGTTCTGTGTTGACGAGTTTCAAATGGCAAGTCTTCCCTATAGCAGCTTTCTGTCTAATGATCTCTTGCCATCCCTTGGAGCCAGAATCAACCAAGAAACAAGGCTTAGAAGATGCACAGTTTCCCCTTTTGATCCACGTTACAGGGCCTGGGAGATGCTGCTGATTGTCTTTGTTGTTTACTCTGCATGGATTTGCCCCTTTGAGTTTGCCTTTCTCCATCAAAAGCACGACACACTGTTCATCATAGACAACATTGTCAATGCCTTCTTTGCCATCGACATCGTTCTCACATTCTTTGTTGCATATCTCGATCACCATTCCTACCTTCTTGTTGATAATCCAAAGAAAATTGCAATAAGGTACCTATCTACTTGGTTCGTCTTTGACGTGTGTTCAACTGCACCATTTGAATCCATCAGCCTCCTATTCACCGATCACAATAGTGAAATTGGGTTCAAAATTCTGAACATGCTTCGGTTGTGGCGCCTCAGACGTGTCAGTTCTCTGTTTGCAAGACTTGAGAAGGACATTCGCTTCAACTACTTCTGGACCAGGTGCTCAAAACTCATTGCTGTGACATTGTTTGTGGTGCACCTTGCTGGGTGCTTCAACTATCTGATAGCAGATAGGTACTATGATCCGAAAACAACATGGATTGGTTCAGTGTTTCCAAATTTCAAAGAAGAGAGTCTGTGGGAAAGATACGTGACTTCCATGTATTGGTCCATTGTGACACTTACTACCACTGGCTATGGAGACTTGCATGCTACAAACACAAGAGAGATGCTCTTTTTCATCTTCTACATTTTGTTCAACTTGGGATTAACTTCATACATCATCGGAAACATGACAAACCTCGTTGTCCATTGGACAAGCCGCACCAGAAACTTTAGAGACACAGTGAGAGCAGCTTCAGAATTTGCATCGAGAAACCATCTGCCACATCACATACAGGAACAGATGTTGTCACACTTGTGTTTGAAATTCAAGACAGAAGGAGTGAAGCAGCAAGAGACACTGAATGGCCTGCCAAAGGCAATTCGTGCAAGCATTGCACACCATCTCTTTTTCCCTCTTCTCCAGAGACTATACCTCTTCCAAGGAGTATCAGATGATTTTCTTTTCCAACTGGTTACTGAGATGGACGCTTTGTATTTCCCACCAAAGGAAGATGTGATATTGCAAAACGAGTCTCCCACAGACCTCTACATACTGGTTTCAGGGGCAGTGGATATGATTCGTTATGTTGATAGGAATGAGCAAGTTCTGAAGAAGGCTGTTGCAGAGGACATATTTGGGGAGATTGGAGTGTTGTACTGTAGACCACAGCCTTTCACTGTTCGGACCACTGAGCTTTCTCAGATTTTAAGACTCGGCAGAACTTCCTTAATGAACTCCTTAAATGGATATCCAGAAGCTGCACAAATCATAATGAAAAATCTCTTCATGAGGATAAAGGGGCATGAAGGTTTGGATTTTGAATGTTCACCAAGGGAACCCCAAATGCATGAAATGGATAACACAGAAACAAGTGTTCCTGATTCATCTGTAAGTAATTCTCATGAGGAAACCAGATTGCATATTCCTGAGGATGGAAAAGAAGATTTTGATGCTACTTTCCGTAAAGATCATGCTGAAATGGAAGAAAATGAGAAGAACCAAGGCCCTATAAGATGGAAACAGAAGTCTCTTGTAGATCAGCAACAAAACAAGAGCCTTTCTGACCTTGCAGTGGTGAACCATGAAAATAGGAAGATAGTAGATGAACATATTATAAAATTTTTGGAGCCAGAAATCCCTTTCGATTACCCTTTAGGAAAAACATACTCAAACTCCTATTCAAGTGCTTCTAACCATAGAACTGAGAGAGAAACAGAAAGATTCTTCAAAAAGAGAGTTGTCATCCACTTTCTAAGCAAACACAGAACCAGCTTACAGGAACATGGCAAGTTGATAATGCTACCTCATTCATTACAAGAGCTGCTCCATATTGCAGGAGAAAAATTTGGAGTCTCCAAGCTTACAAAAGTAATTACCATAGAGAATGCAGAGATAGATGATATCAGTGTGATTCGAGATGGGGATCATCTATTTTTTGATTGCAGTGACACTGAAAATTGA 2157 0.4126 MPFCSGQKFFKRFCVDEFQMASLPYSSFLSNDLLPSLGARINQETRLRRCTVSPFDPRYRAWEMLLIVFVVYSAWICPFEFAFLHQKHDTLFIIDNIVNAFFAIDIVLTFFVAYLDHHSYLLVDNPKKIAIRYLSTWFVFDVCSTAPFESISLLFTDHNSEIGFKILNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCSKLIAVTLFVVHLAGCFNYLIADRYYDPKTTWIGSVFPNFKEESLWERYVTSMYWSIVTLTTTGYGDLHATNTREMLFFIFYILFNLGLTSYIIGNMTNLVVHWTSRTRNFRDTVRAASEFASRNHLPHHIQEQMLSHLCLKFKTEGVKQQETLNGLPKAIRASIAHHLFFPLLQRLYLFQGVSDDFLFQLVTEMDALYFPPKEDVILQNESPTDLYILVSGAVDMIRYVDRNEQVLKKAVAEDIFGEIGVLYCRPQPFTVRTTELSQILRLGRTSLMNSLNGYPEAAQIIMKNLFMRIKGHEGLDFECSPREPQMHEMDNTETSVPDSSVSNSHEETRLHIPEDGKEDFDATFRKDHAEMEENEKNQGPIRWKQKSLVDQQQNKSLSDLAVVNHENRKIVDEHIIKFLEPEIPFDYPLGKTYSNSYSSASNHRTERETERFFKKRVVIHFLSKHRTSLQEHGKLIMLPHSLQELLHIAGEKFGVSKLTKVITIENAEIDDISVIRDGDHLFFDCSDTEN 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00456 718 SUPERFAMILY Voltage-gated potassium channels 54 299 - -
Vian5g00456 718 ProSiteProfiles cAMP/cGMP binding motif profile. 377 496 IPR000595 -
Vian5g00456 718 SUPERFAMILY cAMP-binding domain-like 304 496 IPR018490 -
Vian5g00456 718 PANTHER POTASSIUM CHANNEL AKT1 26 505 IPR045319 GO:0005249|GO:0006813
Vian5g00456 718 ProSiteProfiles KHA domain profile. 644 718 IPR021789 -
Vian5g00456 718 Gene3D - 60 300 - -
Vian5g00456 718 PRINTS EAG/ELK/ERG potassium channel family signature 72 79 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vian5g00456 718 PRINTS EAG/ELK/ERG potassium channel family signature 291 300 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vian5g00456 718 PRINTS EAG/ELK/ERG potassium channel family signature 95 105 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vian5g00456 718 PRINTS EAG/ELK/ERG potassium channel family signature 106 115 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vian5g00456 718 PRINTS EAG/ELK/ERG potassium channel family signature 247 264 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vian5g00456 718 SMART cnmp_10 377 494 IPR000595 -
Vian5g00456 718 Pfam Ion transport protein 60 306 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vian5g00456 718 CDD CAP_ED 377 490 IPR000595 -
Vian5g00456 718 FunFam Potassium channel KAT2 365 501 - -
Vian5g00456 718 Pfam Cyclic nucleotide-binding domain 397 477 IPR000595 -
Vian5g00456 718 Gene3D Jelly Rolls 366 498 IPR014710 -
Vian5g00456 718 MobiDBLite consensus disorder prediction 514 536 - -
Vian5g00456 718 FunFam Potassium channel KAT3 61 301 - -
Vian5g00456 718 Gene3D Helix hairpin bin 301 365 - -
Vian5g00456 718 Pfam KHA, dimerisation domain of potassium ion channel 643 711 IPR021789 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00456 Vian-Chr5 12117219 12122593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00456 1 711 Ion Channels AT5G46240 59.583 0.0 853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00456 5 12117219 12122593 Vian5g00456 5 12117219 12122593 ECH